Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29150 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 358 / 9e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 350 / 2e-122 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29370 338 / 5e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 338 / 8e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 336 / 3e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29260 335 / 9e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29310 329 / 2e-114 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29300 326 / 3e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039500 [exp] 464 / 1e-167 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 458 / 2e-165 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 423 / 1e-151 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G026100 [exp] 392 / 9e-140 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 348 / 7e-122 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 341 / 4e-119 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 337 / 9e-118 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 330 / 6e-114 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 321 / 6e-111 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040736 [exp] 365 / 2e-128 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 342 / 4e-119 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 340 / 2e-118 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 337 / 2e-117 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 336 / 4e-117 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 335 / 1e-116 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 334 / 4e-116 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 328 / 6e-114 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10016497 [exp] 327 / 3e-113 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 323 / 1e-111 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.013G026000.1 pacid=42811663 polypeptide=Potri.013G026000.1.p locus=Potri.013G026000 ID=Potri.013G026000.1.v4.1 annot-version=v4.1 ATGGAGAAGAGATGGTCTCTCCAAGGAATGACGGCTCTTGTCACTGGTGGAACCAAAGGGATTGGTTATGCTGTTGTGGATGAGTTGGCAGCGCTAGGGG CAATCGTGCATACATGTGCGAGGAACCAAGACCAGCTCAATGAACGCATCCGTGAATGGAATGAGAAGGGTTTTAAAGTTACTGGTTCAGTCTGTGATGT ATCCTCTGATGCTGAAAGAGAGAAGCTGATGGAGGAGGTTTCCTCTCGCTTTGATGGTAAACTTAATATCCTTGTAAACAATGCTGGGACAAACATATAT AAAGCGACCTTAGATTACACAGCTGAGGATTTCACATCTCTCATGAACACAAACCTTCAATCTGCTTTCCATTTGTCCCAACTTGCACATCCCCTTTTGA AAGCTTCAGGGGCTGGAAAGATTGTCTTCATGTCTTCCATTGGTAGTGTGGTATCTGTAAACCCTCAGTATCCTTTGTATTCAGCTTCTAAAGGTGCAAT GAACCAACTTACAAGGAATTTGGCGTGCGAATGGGCTAAGGACAATATAAGGGTTAACGGAGTTGCGCCCTGGTTCGTCCGAACTCCACTCACAGCACAT AGTCTGGATGATGAGAGCATTGCGAAGGAGGTTTTCAGTCGAACCCCCATGAGACGCGTTGGGGAACCAGGGGAGGTCTCTTCTGTTGTCGCATTTCTAT GCTTGCCTGCACCAGGTTTCTTAACAGGACAAATCATATGCGTAGATGGAGGGATGTCAGTGAATGGCTTTTCCATGGGTTGA
AA sequence Show only first row Show all	>Potri.013G026000.1 pacid=42811663 polypeptide=Potri.013G026000.1.p locus=Potri.013G026000 ID=Potri.013G026000.1.v4.1 annot-version=v4.1 MEKRWSLQGMTALVTGGTKGIGYAVVDELAALGAIVHTCARNQDQLNERIREWNEKGFKVTGSVCDVSSDAEREKLMEEVSSRFDGKLNILVNNAGTNIY KATLDYTAEDFTSLMNTNLQSAFHLSQLAHPLLKASGAGKIVFMSSIGSVVSVNPQYPLYSASKGAMNQLTRNLACEWAKDNIRVNGVAPWFVRTPLTAH SLDDESIAKEVFSRTPMRRVGEPGEVSSVVAFLCLPAPGFLTGQIICVDGGMSVNGFSMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29290			NAD(P)-binding Rossmann-fold s...		Potri.013G026000 [exp]	0	1
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Potri.005G053000 [exp]	3.87	0.8711
AT2G14900			Gibberellin-regulated family p...		Potri.001G297700 [exp]	16.43	0.8833
AT5G44130		FLA13	FASCICLIN-like arabinogalactan...		Potri.013G120600 [exp]	21.11	0.8813
					Potri.009G070201 [exp]	25.86	0.8728
AT5G39860	bHLH	BNQ1, BHLH136, ...	PACLOBUTRAZOL RESISTANCE1, BA...		Potri.017G081300 [exp]	33.28	0.8712
AT5G39240			unknown protein		Potri.004G119600 [exp]	38.41	0.8699
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127100 [exp]	45.74	0.8689
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Potri.006G009400 [exp]	45.83	0.7933
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.014G160200 [exp]	46.98	0.8672
AT5G18060			SAUR-like auxin-responsive pro...		Potri.009G126300 [exp]	54.99	0.8641

Compare expression of checked genes

Potri.013G026000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.