Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54780 383 / 7e-135 AtTLP18.3, TLP18.3 thylakoid lumen protein 18.3, thylakoid lumen 18.3 kDa protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G038700 [exp] 469 / 9e-169 AT1G54780 370 / 9e-130 thylakoid lumen protein 18.3, thylakoid lumen 18.3 kDa protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035346 [exp] 405 / 2e-143 AT1G54780 401 / 3e-142 thylakoid lumen protein 18.3, thylakoid lumen 18.3 kDa protein (.1) Lus10029979 [exp] 404 / 5e-143 AT1G54780 402 / 1e-142 thylakoid lumen protein 18.3, thylakoid lumen 18.3 kDa protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF04536 [poplar] [flax] TPM_phosphatase TPM domain
Representative CDS sequence Show only first row Show all	>Potri.013G026400.1 pacid=42812497 polypeptide=Potri.013G026400.1.p locus=Potri.013G026400 ID=Potri.013G026400.1.v4.1 annot-version=v4.1 ATGGAAACCTTACTTTCTTCGCACTCTCTTTCTCCTCTCCTCAACTCAAAACCATCCTCTTCGAAATCCCATTTGCTACCTTCTCTTCAAACAAGATCAA ACTCACTCTCTTTCACCCACAAGAGCATCACTTCTAGCCTCAAAAGGCACACTTCTCAATCTTTGTCGGTGCCCAATAGCTGGTTCAGTTATGCTCAACA AGGCCTAGCAGCATTAGCTCTCGCTTTGGCACTCAACTTTAGTCCGCTGTTGTACATTGGAAATGCTCAAGCATCTGAATTTGACGTGCTCAATGAAGGG CCACCAAAAGAGTCTTATATATTTGATGATGCTGGTGTGCTTAGTAGAGTGACTAAATCTGATCTGAAGCAGCTGTTATCTGATTTGGAATCAAGGAAGA ACTTCAAGATCAATTTCATTACTGTTAGAAAGCTTACTAGCAAAGCAGATGCTTTTGAATATGCCGACCAAGTTCTGGAGAAATGGTATCCCACTGTTGA AGAGGGCAGCAACAAGGGAATTGTTGTGCTTGTAACCAGCCAAAAGGAAGGGGCAATTACGGGGGGGCCTGCATTTATCCAAGCAGTTGGAGAAACTGTT CTTGATTCCACTGTCTCGGAGAACCTTCCTGTCTTGGCGACGGAAGAAAAGTACAATGAAGCGATTTATAGCAGTGCCAAGAGGTTAGTGGCTGCTATCG ATGGGCTTCCAGATCCAGGCGGTCCGACGACTAAAGAAAACAAACGAGAATCCAACTTCAAAAGCAAGGAAGAGACAGAAGAGAAGAGGGGACAATTCAC TCTAGTGGTTGGAGGTCTATTGGTGATTGCTTTTGTTGTTCCCATGGCGCAATACTATGCTTATGTTTCAAAGAAATAG
AA sequence Show only first row Show all	>Potri.013G026400.1 pacid=42812497 polypeptide=Potri.013G026400.1.p locus=Potri.013G026400 ID=Potri.013G026400.1.v4.1 annot-version=v4.1 METLLSSHSLSPLLNSKPSSSKSHLLPSLQTRSNSLSFTHKSITSSLKRHTSQSLSVPNSWFSYAQQGLAALALALALNFSPLLYIGNAQASEFDVLNEG PPKESYIFDDAGVLSRVTKSDLKQLLSDLESRKNFKINFITVRKLTSKADAFEYADQVLEKWYPTVEEGSNKGIVVLVTSQKEGAITGGPAFIQAVGETV LDSTVSENLPVLATEEKYNEAIYSSAKRLVAAIDGLPDPGGPTTKENKRESNFKSKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYVSKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.013G026400 [exp]	0	1
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.008G151600 [exp]	1.73	0.9863	PSAD1.2
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Potri.003G119200 [exp]	2.00	0.9844
AT2G40100		LHCB4.3	light harvesting complex photo...		Potri.008G067300 [exp]	3.74	0.9750	Lhcb8,LHCB4.1
AT4G21445			unknown protein		Potri.004G033400 [exp]	3.87	0.9821
AT3G61470		LHCA2	photosystem I light harvesting...		Potri.003G171500 [exp]	4.00	0.9829	LHCA2.1,Lhca2-2
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Potri.014G172400 [exp]	4.24	0.9841	LHCA3*1.1,Lhca3
AT4G24700			unknown protein		Potri.015G084200 [exp]	6.32	0.9796
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Potri.010G052000 [exp]	7.00	0.9802	PSBY.2
AT3G61870			unknown protein		Potri.014G102400 [exp]	8.12	0.9817
AT3G48420			Haloacid dehalogenase-like hyd...		Potri.015G088500 [exp]	8.48	0.9795

Compare expression of checked genes

Potri.013G026400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.