Plant FIBer expression Database

Potri.013G026500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G27390 302 / 2e-104 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015165
[exp]
307 / 4e-106 AT5G27390 307 / 2e-106 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Lus10031517
[exp]
304 / 4e-105 AT5G27390 304 / 2e-105 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info
Representative CDS sequence
>Potri.013G026500.6 pacid=42811687 polypeptide=Potri.013G026500.6.p locus=Potri.013G026500 ID=Potri.013G026500.6.v4.1 annot-version=v4.1
ATGGCCATTCTCCTCTCCCTCTCTCCTCACCACCACCACCCTCCTCTAAACCCTCGACAAAATCCAAACCCCTATAGCCCAAAACCAACCCCTCATGCCA
CTAGCCTCCCCAGCACCATCTCTAAGAGACAGTTCATCTTCAAAACTACTTCACTTTGTCTCATTTCCTTAGCCACTCAACACCCTCTTGCACAAGCCTT
AGCTGAACCTTCTCCACCTTTAAAATCTGTTCTTTCTATCCTTGCCAATACAAAATCCTGGTTTCAGTTCTATGGTGATGGTTTTGCCATCAGGGTCCCT
CCTCAATTTGAGGACATCATGGAACCAGAGGATTACAGTGCTGGGCTGTCTTTATATGGAGATAAGGCAAAGCCAAAGACCTTTGCAGCCCGTTTTGCAT
CTTCTGATGGATCTGAAGTTCTAAATGTTGTCGTTCGCCCTTCCAATCAACTGAAGATCACCTTCTTAGAGGCTAAAGATATTACTGATTTGGGATCATT
GAAGGAGGCTGCAAAACTCTTTGTTCCAGGTGGGACAACTTTATTCTCTGCCCGTACACTAAAAATAAAAGAAGAGGAAGGTTACCGGACTTATTACTTC
TATGAATTTGGCAGAGATGACCAGCATGCGGCACTAGTAGCTGTGGTTAACAGTGGAAAGGCAATTATCGCAGGAGCAACTGCCCCACAGTCGAAATGGG
ACGAAGATGGTGTAAAGCTTCGGTCTGCTGTTATTTCACTGACAGTTCTGTAG
AA sequence
>Potri.013G026500.6 pacid=42811687 polypeptide=Potri.013G026500.6.p locus=Potri.013G026500 ID=Potri.013G026500.6.v4.1 annot-version=v4.1
MAILLSLSPHHHHPPLNPRQNPNPYSPKPTPHATSLPSTISKRQFIFKTTSLCLISLATQHPLAQALAEPSPPLKSVLSILANTKSWFQFYGDGFAIRVP
PQFEDIMEPEDYSAGLSLYGDKAKPKTFAARFASSDGSEVLNVVVRPSNQLKITFLEAKDITDLGSLKEAAKLFVPGGTTLFSARTLKIKEEEGYRTYYF
YEFGRDDQHAALVAVVNSGKAIIAGATAPQSKWDEDGVKLRSAVISLTVL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G27390 Mog1/PsbP/DUF1795-like photosy... Potri.013G026500
[exp]
0 1
AT2G21530 FHA SMAD/FHA domain-containing pro... Potri.009G156700
[exp]
3.46 0.9729
AT2G30695 unknown protein Potri.013G125500
[exp]
6.00 0.9652
AT2G04790 unknown protein Potri.014G162700
[exp]
10.09 0.9486
AT2G46220 Uncharacterized conserved prot... Potri.014G092200
[exp]
10.81 0.9398
AT2G21530 FHA SMAD/FHA domain-containing pro... Potri.009G156900
[exp]
11.40 0.9607
AT3G63540 Mog1/PsbP/DUF1795-like photosy... Potri.009G062500
[exp]
11.83 0.9600
AT1G03600 PSB27 photosystem II family protein ... Potri.005G206200
[exp]
12.40 0.9570
AT1G04940 AtTic20-I, atTI... translocon at the inner envelo... Potri.005G231400
[exp]
12.64 0.9479
AT1G16080 unknown protein Potri.003G185501
[exp]
13.19 0.9604
AT1G32580 plastid developmental protein ... Potri.010G068300
[exp]
14.07 0.9595

Potri.013G026500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.