Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05030 548 / 0 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT5G27150 547 / 0 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT5G55470 487 / 1e-167 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT3G06370 459 / 3e-157 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT1G79610 126 / 7e-31 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 124 / 3e-30 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031700 [exp] 552 / 0 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.005G045100 [exp] 551 / 0 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.010G031500 [exp] 543 / 0 AT3G05030 792 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.014G134900 [exp] 529 / 0 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.016G000200 [exp] 134 / 2e-33 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005934 [exp] 547 / 0 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10040903 [exp] 545 / 0 AT3G05030 769 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10004141 [exp] 545 / 0 AT3G05030 846 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10033840 [exp] 542 / 0 AT3G05030 854 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10012801 [exp] 530 / 0 AT3G05030 790 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10016583 [exp] 499 / 4e-172 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10001718 [exp] 494 / 4e-167 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10018989 [exp] 473 / 8e-158 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10014891 [exp] 364 / 4e-121 AT5G55470 528 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10039131 [exp] 132 / 2e-32 AT1G79610 677 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.013G026600.1 pacid=42811848 polypeptide=Potri.013G026600.1.p locus=Potri.013G026600 ID=Potri.013G026600.1.v4.1 annot-version=v4.1 ATGCTAACAGAGTCATTTTCCTTAAAAATTTCTTCAAACCATTTAACCTGCGAAATGGCCACAAAAATCTCGAATGCTGCTATGTTTGGCCTTAGCCCTG AAAACATGTCCTCTCATGAACATTTACCTTTGGAATTAGATTCTTCATTCCTTAATACTAGCACCATAATAGCACTTTGTGTCTTCTTTGCTCTCCTTTG TGCTTGTATCATTATTGGTCACCTTCTTGAAGAGCACCGCTGGGCTAATGAGTCCATCACTGCACTTCTTTTGGGGTTGTGTGCTGGTGGTGTGGTTTTG TTGGTTAGGAAAGGGGCGAGTTCGCATTTATTGAAGTTTAGCGAGGATTTGTTCTTCCTTTATTTGCTTCCTCCAATCATTTTCAATGCAGGATTCCAGG TTAAGAAAAAGCGGTTTTTCAAGAATTTTTCAACAATCTTGTTGTTTGGAATATTTGGCACAGTAATTTCGTTCTGCATCATATCACTAGGTGTTTTTTG GATTTTTAGGAAAATTGGTGTGGAATCCCTGAGTCTCAAAGATCACCTAGCTATCGGTGCCATAATGTCAGCAACTGACTCAGTTTGCACATTGCAGGTT CTCAGTCAAGATGAGACACCCTTTCTTTACAGTATAGTGTTTGGGGAGGGTGTAGTGAATGATGCTACCTCTATTGTGCTTTTCAATTCAGTTCAAACGC TGGATTTCCACAACATTGATGGCTTAACAGTCTTAAAATTGATAGGGACCTTCCTTTACCTCCTCTTCACAAGTACTGCTCTTGGTATAGCAGTGGGTCT TTTAAGTGCTTTTATCATAAAAACACTTTACTTTGGAAGGCATTCTACTGATCGTGAATTTGCACTTATGATTCTTATGGCTTATTTGTCATACCTTCTA GCTGAGCTTCTAAATCTGAGTGGGATTCTGACAGTTTTCTTCTGTGGCATTGTAATGTCGCACTACACATGGCACAATGTTACAGAAAGCTCACGGATAA CAACCAAGCATGCATTTGCAACAATGTCATTCATTGCAGAAACTTTCATATTTCTATATGTGGGTATGGATGCCTTAGACATTGACAAATGGAGAGAAAG CAAGGCAAGTGCAGGAACTTCAGCTGCCGTCAGCTCAACATTGTTTGCATTAGTGTTAGTTGGAAGGGCAGCATTTGTTTTTCCCATAGCAAATATCTTA AATTGTGTTCAGAAAAGCGAGAGCTCGAAAATTCATTTCAAACAACAGTTTATTATGTGGTGGGCAGGGTTAATGAGAGGTGCAGTTACAATTGCTTTAT CTTATAACCAATTTGCAAGTTATATGAGGAAGTCCCCAGAATCTGCACTAATGATTACCAGTACCATAATCGTTGTTCTTTTCAGCACAATTGTCTGCGG TTCGGTAACGAAACCTCTAATTGAAGCAGTGCTGTTAAGACATAGAAAACCAATGGTTTCAGATTTCACTGATAACGTAAGCCTGGAAGACTTGAGGGTA CTGTTACTTGAAAGTGGTGATCCAAGTAACAGCAACAACAATCAACCAGCTCGAAGGGCAAGTAGCTTAAGGTTGCTAATAAGACACCCCACCACAACTG TTCACTACTTTTGGAGAAAGTTTGATGACAGATTCATGAGACCAATGTTCGGCGGGCGGGGATTTGTTCCATTTGTACCTAGTACACCCACAGGTGCAGC TGATGAGAGTTCTTCTGCGTGA
AA sequence Show only first row Show all	>Potri.013G026600.1 pacid=42811848 polypeptide=Potri.013G026600.1.p locus=Potri.013G026600 ID=Potri.013G026600.1.v4.1 annot-version=v4.1 MLTESFSLKISSNHLTCEMATKISNAAMFGLSPENMSSHEHLPLELDSSFLNTSTIIALCVFFALLCACIIIGHLLEEHRWANESITALLLGLCAGGVVL LVRKGASSHLLKFSEDLFFLYLLPPIIFNAGFQVKKKRFFKNFSTILLFGIFGTVISFCIISLGVFWIFRKIGVESLSLKDHLAIGAIMSATDSVCTLQV LSQDETPFLYSIVFGEGVVNDATSIVLFNSVQTLDFHNIDGLTVLKLIGTFLYLLFTSTALGIAVGLLSAFIIKTLYFGRHSTDREFALMILMAYLSYLL AELLNLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATMSFIAETFIFLYVGMDALDIDKWRESKASAGTSAAVSSTLFALVLVGRAAFVFPIANIL NCVQKSESSKIHFKQQFIMWWAGLMRGAVTIALSYNQFASYMRKSPESALMITSTIIVVLFSTIVCGSVTKPLIEAVLLRHRKPMVSDFTDNVSLEDLRV LLLESGDPSNSNNNQPARRASSLRLLIRHPTTTVHYFWRKFDDRFMRPMFGGRGFVPFVPSTPTGAADESSSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G026600 [exp]	0	1
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Potri.010G062300 [exp]	2.82	0.9268
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033600 [exp]	7.21	0.9198
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Potri.010G149500 [exp]	7.74	0.9128	Pt-SFR2.2
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.009G043800 [exp]	14.31	0.9123
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Potri.001G349400 [exp]	14.59	0.8397
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Potri.001G412900 [exp]	15.58	0.9141
AT5G52450			MATE efflux family protein (.1...		Potri.012G051900 [exp]	16.00	0.8976
AT1G79050			recA DNA recombination family ...		Potri.001G438900 [exp]	16.52	0.8784
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Potri.002G106900 [exp]	17.08	0.8143
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033300 [exp]	20.34	0.9111

Compare expression of checked genes

Potri.013G026600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.