Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27395 356 / 8e-124 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029978 [exp] 188 / 3e-58 AT5G27395 156 / 7e-46 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein (.1.2) Lus10035347 [exp] 182 / 3e-56 AT5G27395 183 / 1e-56 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [poplar] [flax] NTF2 PF04280 [poplar] [flax] Tim44 Tim44-like domain
Representative CDS sequence Show only first row Show all	>Potri.013G026700.1 pacid=42812587 polypeptide=Potri.013G026700.1.p locus=Potri.013G026700 ID=Potri.013G026700.1.v4.1 annot-version=v4.1 ATGGCCCTATTTAGAAGATTACAAGCAATTCGTGCACTTAATCAAACCATTGGGATTCGAGAATCTTCTTCTTATCTACTTGGGAGCTCAAGAAGCTACT CCAGTAGCTCCACTGATATTTCAAATGGTATTAAACTTAATTCCCCAAGATTTTCTTCTTGCTTATATAATGGCCGCAATGCTCTTCCTTGGACTCATAG AAGTACAATGACTCTACGTTCTACAATGGCCATGGAGTTATCAATCTTCTTAAATGACAAGAGGTCGGCAACAACAAAAGTGAATGCCCCCCCACAAGCA CGACAGATGGGATCTCTTAAAGTGTCCATTTCAAGTCCTGGATTCATATATGAACCGTATGCTCCTCGTGATACAATCTCATTCTGGCGGAGATGGTTCA CAAAAAGCGGCTGGAGAAGAACAAAAAACGACATCATTTTAGAGCTCAAAAATGCCTATGCTATTGTTAAGTTAAGAAAAACTGGATACTCAAAACATAA GTTTTACGTAGAAGCCATCAAATTATACAAAGAGATAAACACTCTACTGGCAAATGGTGACAAAACAGCACTCAGAAAAGCAGTTACAGAGAAAATGTAC TCCGAACTCAAAAATGAAATTAAACAAAGACAGTCTGCATGGAATATGAGCAAGCTTTATTGGGAGATGATTGAACCAGCTGTTCTGATACGAACTTTGC GAGCTCGACTGATTGGTGTTGATAAGAGCGATCTCAATAAAGTTTTCATACAGCTAACACTTGAGATCAAGACAAAGCAGAAGTTCGAGGCATATGATTC TAAAGGAGCCAGAGTTGCTGGAGATAAAAATAAGGAGATCCTTGTCCGCGAAATCTGGGTATTTGAGAAATCCCTTTTTCACCCTGGAGCTTACTGGCGG CTTTGTGGACGAATTAAAGCATAA
AA sequence Show only first row Show all	>Potri.013G026700.1 pacid=42812587 polypeptide=Potri.013G026700.1.p locus=Potri.013G026700 ID=Potri.013G026700.1.v4.1 annot-version=v4.1 MALFRRLQAIRALNQTIGIRESSSYLLGSSRSYSSSSTDISNGIKLNSPRFSSCLYNGRNALPWTHRSTMTLRSTMAMELSIFLNDKRSATTKVNAPPQA RQMGSLKVSISSPGFIYEPYAPRDTISFWRRWFTKSGWRRTKNDIILELKNAYAIVKLRKTGYSKHKFYVEAIKLYKEINTLLANGDKTALRKAVTEKMY SELKNEIKQRQSAWNMSKLYWEMIEPAVLIRTLRARLIGVDKSDLNKVFIQLTLEIKTKQKFEAYDSKGARVAGDKNKEILVREIWVFEKSLFHPGAYWR LCGRIKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27395			Mitochondrial inner membrane t...		Potri.013G026700 [exp]	0	1
AT5G02050			Mitochondrial glycoprotein fam...		Potri.016G102200 [exp]	1.41	0.8963	SDH4.2
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.005G061000 [exp]	3.00	0.8921
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	3.46	0.8870
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Potri.009G149400 [exp]	4.24	0.8787	HD2.2,HDT901
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.016G036100 [exp]	5.19	0.8663
AT3G15460			Ribosomal RNA processing Brix ...		Potri.011G122200 [exp]	5.47	0.8631
AT1G14810			semialdehyde dehydrogenase fam...		Potri.008G135700 [exp]	7.61	0.8071
AT4G02930			GTP binding Elongation factor ...		Potri.014G138100 [exp]	9.89	0.8752	TUFA.4
AT3G23620			Ribosomal RNA processing Brix ...		Potri.015G088700 [exp]	10.81	0.8434
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	12.00	0.8468

Compare expression of checked genes

Potri.013G026700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.