Plant FIBer expression Database

Potri.013G026800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G27380 765 / 0 GSHB, GSH2 glutathione synthetase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G038100
[exp]
1032 / 0 AT5G27380 757 / 0.0 glutathione synthetase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029976
[exp]
743 / 0 AT5G27380 697 / 0.0 glutathione synthetase 2 (.1)
Lus10035348
[exp]
733 / 0 AT5G27380 697 / 0.0 glutathione synthetase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0483 PreATP-grasp PF03917 GSH_synth_ATP Eukaryotic glutathione synthase, ATP binding domain
Representative CDS sequence
>Potri.013G026800.1 pacid=42811216 polypeptide=Potri.013G026800.1.p locus=Potri.013G026800 ID=Potri.013G026800.1.v4.1 annot-version=v4.1
ATGGGCATCTCTTATTCATCCCCTCTTTCACCGTCTCTTTCCACCACTACTCTTAACATCACTCATTCCTCTCTTTTCCCCTGCACAGCAAAAGCAAACC
CAGGAACAGTATCAGATTCTACTTTTAGTCACACCAATAATATCAGCTTGAATAATCTCCAAAAACCCACAAAAAAGTTTGGATCTTTTTTTTATTGTTC
ACATAACACCACCTGTTTAGGCTCAAAGATTGTACCTTTGAAGTGTTTTGACAAAGCAAGGGAAATGGAGACTCAAGAGGGAATTGCTCAAAAACCCACG
ATTGATATTCATGGTATTGATGAAGAGTTGGTTCAAAAGATGGTCTATGATGCTCTTGTTTGGAGTTCTCTTCATGGCCTTGTTGTTGGTGATAGAAGCG
TTCAGAGATCAGGAAAAGTACCAGGAGTGGGCATGGTACATGCGCCATTTTCCCTGTTGCCTATGACATTCCCAGAAAGTCATTGGAAGCTAGCATGTGA
AGTAGCACCTATCTTCAATGAGCTCATTGATCGTGTGAGTTTGGATGGGAAATTTCTACAGGATGCTTTATCCAGAACGAAGAAAGTGGATGCCTTTACA
TCGAGACTTATAGATATGCATTCCAAGATGCTAGAAATTAACAAGAGTGAAGAGATACGCTTGGGTTTACATCGATCAGATTATATGCTTGATGAACAAA
CTAAATTACTCCTCCAAATAGAGCTAAATACAATTTCATCTTCATTTCCTGGCCTCAGTTGTCTTGTCAGTGACCTTCACAGGAGCTTGCTTAAGTACTA
TGGAGAACATATTGGATTAGATTCCAGTAGAATACCTGGAAACACTTCTGTTGATAAGTTTGCAGAGGCGTTGGCTAAAGCTTGGACTGAGTATAATAAC
CCTAGGGCTTTGGTTCTGGTGGTTGTTCAGCCTGAAGAACACAACATGTATGATCAACATTGGCTTTGTGCAGCATTGAAGGAAAGACATAATGTCACAA
CTATTCGGAAAACATTGGCAGAAATAGACAAGGATGGGGAAATTCTACCAGATGGAACTCTTCTTGTAGGTGGAAAAGAAATTTCAGTTGTTTATTTTAG
AGCTGGTTATGCACCTACTGATTATCCTTCAGAAGCTGAATGGAGAGCTAGGGTACTTATGGAGCAGTCATCAGCTGTCAAGTGCCCATCCATATCTTAT
CATTTAGCTGGAACCAAAAAGATTCAACAAGAACTTGCAAAACCCAATATGCTTGAAAGATTTCTAGAGAACAAAGAGGACATTGCCAAATTGCGGAAAT
GCTTTGCTGGATTATGGAGTCTGGATGATTCAGATATCATCAAAAAAGCCATTGAGAGGCCTGATCTCTTTGTGATGAAGCCCCAAAGAGAAGGCGGAGG
AAACAATATCTACGGTGATGATGTGAGGACAAACCTTCTAAGATTGCAGAAAGAAGGAAGCGAAGAGGATGCTGCTTACATCCTAATGCAAAGAATTTTT
CCTATGGTTTCGCCCACATTTTTGGTGCGTGAGGGCATTTGCCACAAAGATCATGCCATATCAGAACTTGGAGTATATGGTGCTTACTTGAGGAACAAGG
AGAAAGTTATCATAAATGAGCAGTGTGGATACTTGATGCGGACAAAGGTATCTTCATCAAATGAAGGAGGAGTTGCAGCTGGATTCGCAGTCTTGGACAG
TATATACTTGAATTAA
AA sequence
>Potri.013G026800.1 pacid=42811216 polypeptide=Potri.013G026800.1.p locus=Potri.013G026800 ID=Potri.013G026800.1.v4.1 annot-version=v4.1
MGISYSSPLSPSLSTTTLNITHSSLFPCTAKANPGTVSDSTFSHTNNISLNNLQKPTKKFGSFFYCSHNTTCLGSKIVPLKCFDKAREMETQEGIAQKPT
IDIHGIDEELVQKMVYDALVWSSLHGLVVGDRSVQRSGKVPGVGMVHAPFSLLPMTFPESHWKLACEVAPIFNELIDRVSLDGKFLQDALSRTKKVDAFT
SRLIDMHSKMLEINKSEEIRLGLHRSDYMLDEQTKLLLQIELNTISSSFPGLSCLVSDLHRSLLKYYGEHIGLDSSRIPGNTSVDKFAEALAKAWTEYNN
PRALVLVVVQPEEHNMYDQHWLCAALKERHNVTTIRKTLAEIDKDGEILPDGTLLVGGKEISVVYFRAGYAPTDYPSEAEWRARVLMEQSSAVKCPSISY
HLAGTKKIQQELAKPNMLERFLENKEDIAKLRKCFAGLWSLDDSDIIKKAIERPDLFVMKPQREGGGNNIYGDDVRTNLLRLQKEGSEEDAAYILMQRIF
PMVSPTFLVREGICHKDHAISELGVYGAYLRNKEKVIINEQCGYLMRTKVSSSNEGGVAAGFAVLDSIYLN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G27380 GSHB, GSH2 glutathione synthetase 2 (.1) Potri.013G026800
[exp]
0 1
AT4G18593 dual specificity protein phosp... Potri.016G035700
[exp]
8.77 0.5790
AT5G08420 RNA-binding KH domain-containi... Potri.007G065500
[exp]
11.31 0.6173
AT1G68990 MGP3 male gametophyte defective 3 (... Potri.008G112800
[exp]
16.27 0.6373
AT4G16440 ferredoxin hydrogenases (.1) Potri.006G017000
[exp]
17.49 0.5836
AT1G02100 SBI1 SUPPRESSOR OF BRI1, Leucine ca... Potri.014G047300
[exp]
18.57 0.5605
AT3G12010 unknown protein Potri.006G195000
[exp]
22.24 0.5512
AT2G36070 ATTIM44-2 translocase inner membrane sub... Potri.005G224500
[exp]
22.44 0.5866 ATTIM44.2
AT3G56990 EDA7 embryo sac development arrest ... Potri.016G037400
[exp]
22.71 0.6066
AT1G60900 U2 snRNP auxilliary factor, la... Potri.011G050400
[exp]
39.11 0.5504
AT5G01600 ATFER1 ARABIDOPSIS THALIANA FERRETIN ... Potri.006G103900
[exp]
39.26 0.5912

Potri.013G026800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.