Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24290 115 / 2e-32 Protein of unknown function (DUF1068) (.1) AT4G30996 110 / 2e-30 NKS1 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) AT2G32580 108 / 7e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) AT1G05070 106 / 4e-29 Protein of unknown function (DUF1068) (.1) AT4G04360 89 / 2e-22 Protein of unknown function (DUF1068) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G038000 [exp] 245 / 8e-84 AT1G05070 110 / 7e-31 Protein of unknown function (DUF1068) (.1) Potri.014G155600 [exp] 112 / 2e-31 AT2G32580 245 / 1e-83 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.004G006500 [exp] 111 / 8e-31 AT2G32580 206 / 6e-68 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.018G111100 [exp] 104 / 2e-28 AT4G30996 208 / 2e-69 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.002G227100 [exp] 104 / 3e-28 AT2G32580 218 / 6e-73 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.006G187800 [exp] 103 / 8e-28 AT4G30996 198 / 1e-65 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035349 [exp] 121 / 9e-35 AT2G32580 110 / 2e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Lus10030034 [exp] 116 / 1e-32 AT1G05070 250 / 1e-85 Protein of unknown function (DUF1068) (.1) Lus10035288 [exp] 114 / 5e-32 AT1G05070 252 / 1e-86 Protein of unknown function (DUF1068) (.1) Lus10019053 [exp] 106 / 6e-29 AT2G24290 259 / 1e-89 Protein of unknown function (DUF1068) (.1) Lus10036299 [exp] 105 / 9e-29 AT2G24290 257 / 1e-88 Protein of unknown function (DUF1068) (.1) Lus10029975 [exp] 100 / 1e-26 AT2G32580 109 / 3e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Lus10015556 [exp] 100 / 2e-26 AT1G05070 179 / 4e-58 Protein of unknown function (DUF1068) (.1) Lus10020038 [exp] 94 / 3e-24 AT1G05070 167 / 4e-53 Protein of unknown function (DUF1068) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06364 [poplar] [flax] DUF1068 Protein of unknown function (DUF1068)
Representative CDS sequence Show only first row Show all	>Potri.013G026900.3 pacid=42810693 polypeptide=Potri.013G026900.3.p locus=Potri.013G026900 ID=Potri.013G026900.3.v4.1 annot-version=v4.1 ATGGCTTATACATCAGAGCATTATGGGTTTAGTAATGGTGCTTTACGGGTGGTTTTGGCGCTGGTGGCTATGTTCTTTGTTGTCTACATTGTTGGACCTG GATTGTTTTCGAAGGGGAGTTCAAATGATGCGCAAGCTTCATGCTTTTGTGATTGCAATTGCTTTGAAGTGGACTTATCATTGACATTAGAATTTATCAA CAACTCATATCCAGAATGTGGCAAGCACGATCCAGAAATAAGTGAAGAAATGAATAAGGGTGTAGCTGATTTAATATCAGAGGAGATTGATTTACAAAAA AGAGTAGCTAATGAAACATTGGAGCAGACAAGGAATTTGGTAACAACTGCTAGGAGAATTTCTTTACAATATCAAACCGAAGCACAAAAATGCAGTGCGC ACACAGAAACTTGCGAAGCAGGAAGGGAGAGAGCCGAAGCTGGACTGGTGGAGGAGCGTAAACTTACAGCATTGTGGGAGCAACGAGCTCTAGAACTGGG GTGGGGAGAAAATATAACTTATGCAGACAATAACACTATTCATAGCCTAAAAAAGACAAATCCGATCGGAGAGGTGCGCCATTAA
AA sequence Show only first row Show all	>Potri.013G026900.3 pacid=42810693 polypeptide=Potri.013G026900.3.p locus=Potri.013G026900 ID=Potri.013G026900.3.v4.1 annot-version=v4.1 MAYTSEHYGFSNGALRVVLALVAMFFVVYIVGPGLFSKGSSNDAQASCFCDCNCFEVDLSLTLEFINNSYPECGKHDPEISEEMNKGVADLISEEIDLQK RVANETLEQTRNLVTTARRISLQYQTEAQKCSAHTETCEAGRERAEAGLVEERKLTALWEQRALELGWGENITYADNNTIHSLKKTNPIGEVRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	0	1
AT5G15080			Protein kinase superfamily pro...		Potri.004G129000 [exp]	1.73	0.9155
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	2.82	0.9108
AT5G14430			S-adenosyl-L-methionine-depend...		Potri.001G342300 [exp]	3.16	0.9045
AT2G25270			unknown protein		Potri.006G258700 [exp]	3.16	0.9132
AT2G33640			DHHC-type zinc finger family p...		Potri.005G254432 [exp]	5.65	0.8861
AT1G78430		RIP2	ROP interactive partner 2 (.1)		Potri.001G377900 [exp]	7.48	0.9007
AT4G02630			Protein kinase superfamily pro...		Potri.005G139500 [exp]	8.48	0.9025
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	8.48	0.8962
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Potri.006G216300 [exp]	8.88	0.8530
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.019G030800 [exp]	9.32	0.8787	SYP111.2

Compare expression of checked genes

Potri.013G026900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.