Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	IFS1.31
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06900 357 / 4e-118 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT3G20950 305 / 8e-98 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1) AT4G12320 298 / 7e-95 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT2G42250 295 / 7e-94 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT2G27000 293 / 5e-93 CYP705A8 "cytochrome P450, family 705, subfamily A, polypeptide 8", cytochrome P450, family 705, subfamily A, polypeptide 8 (.1) AT3G20940 290 / 4e-92 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT4G15350 287 / 6e-91 CYP705A2 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) AT2G14100 287 / 8e-91 CYP705A13 "cytochrome P450, family 705, subfamily A, polypeptide 13", cytochrome P450, family 705, subfamily A, polypeptide 13 (.1) AT5G07990 284 / 9e-90 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G12310 283 / 4e-89 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037100 [exp] 670 / 0 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037201 [exp] 669 / 0 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G049800 [exp] 479 / 7e-166 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G058200 [exp] 454 / 5e-156 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G057900 [exp] 319 / 4e-103 AT2G42250 725 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.016G052600 [exp] 316 / 5e-102 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.009G065000 [exp] 314 / 2e-101 AT5G47990 425 / 1e-144 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.009G066300 [exp] 314 / 3e-101 AT3G20140 419 / 2e-142 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1) Potri.006G190800 [exp] 307 / 2e-98 AT2G42250 509 / 2e-177 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005878 [exp] 536 / 0 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 513 / 1e-178 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10035502 [exp] 436 / 1e-148 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10027798 [exp] 305 / 4e-100 AT5G06900 349 / 1e-117 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10023827 [exp] 296 / 2e-94 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10018717 [exp] 281 / 2e-88 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10013150 [exp] 275 / 2e-86 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 274 / 8e-86 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 269 / 8e-84 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10022303 [exp] 267 / 4e-83 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.013G027000.1 pacid=42812079 polypeptide=Potri.013G027000.1.p locus=Potri.013G027000 ID=Potri.013G027000.1.v4.1 annot-version=v4.1 ATGATTTTTGAGCTTATAATAGCTGGTTTTGCCGTTCTTCTGCTTACAGTCTTCATCTTAACCAATAAAGGGCATGGCTCCCTTCCTCCTGGTCCAGTGC CTTTACCAATCATTGGTCATCTCCATCTTCTTCAACCCCTAATTCACCGTTCTTTTCGTGATTTATGTTCTTGTTATGGTCCCATAATCTATCTCCGCCT TGGTTCTGTCCCTTGTGTTGTGGCTTCCACACCAGAACTCGCTAGAGAACTCCTCAAGACAAACGACCTCACCTTCTCTTCCCGCAAGCATTCTTTAGCC ATTGATCACCTTACCTATAGCTCTTCTTTTGCCTTTGCACCCTATGGACCTTATTGGAGATTCATCAAAAAGTTGAGCACGTTCGAGTTCTTGGGTAACC GGGCACTTAACCAATTTCTCCCTGTCCGAAGAAAGGAACTGCGCCAATTCATTGGGGTTCTACACGACAAGTCTGAAGTTTGTGAGAGTGTTAATGTCAC TGAAGAGTTGCTAAATTTATCAAGCAACATAATCTCACAAATTATATTGAGTCTGAGATGTTCAGGGACTGATAACGAGGCTGAAGGTGTTAGAACTTTG GTGCGTGAGGTGACACAAATCTTTGGAGAGTTTAATGTCTCCGATTTCATTTGGTTTTGCAGGAACTTGGACTTTCGGGGGTATAGAAAGAAATTTGAGG ATGTCCATAGAAGGTATGATGCATTGTTGGAGAATATTATCACAAACCGCGAGATAGAAAGAAAGAAAAGTGGAGGAGAATACAAGGTTAAAGATCTTTT GGACATGATGCTTGATGCATTGGAAGACAAAAGTTCTGAGGTAGAGCTAACTAGAGAGCATATTAAAGCCTTGGTTTTGGATTTCATAACAGCTGCAACG GACACAACGGCAGCTGCAACTGAATGGGCACTAGCAGAGCTCATAAACAATCCGAAGGTACTCGAGAAGGCACGGCAGGAGATTGATACAGTCGTCGGAA ACAAGAGGCTAGTAGAAGAATCAGACTCTCCAAATCTTCCTTATATCCAGGCCATCATCAAGGAAACTTTTAGGCTTCACCCACCAATTCCAATGATTAC AAGAAAATCAATTCAAGAAAGCAAGATCAATGGATACACAATCCCCAAAAACACAATGTTATTTGTGAACATTTGGTCTATTGGAAGAGACTCCAGGTAC TGGAAAAACCCATTAGAATTTGAACCTGAACGGTTTCTAAAATCTGAAGGGGACATGGTTCAATCCACTGCCTCGATGGACATTAAAGGGCAACATTATG AGCTGTTGCCTTTTGGTACTGGCAGAAGAAGCTGCCCTGGCATTGCTTTGGCTTTGCAGGAACTACCTGTAAGTTTGGCAGCCATGATCCAATGTTTCGA GTGGAAAGTGGCTGACCCACATGGAGTGAAAATCAAGGGCAATGCTCTTGTTGATATGACCGAAAGGCCTGGCTTAACAGCTCCAAGGCTCCATGACCTT GTGTGCGCACCGGTACCACGTCCAGCACTCGATAGCTTCCAACCATAA
AA sequence Show only first row Show all	>Potri.013G027000.1 pacid=42812079 polypeptide=Potri.013G027000.1.p locus=Potri.013G027000 ID=Potri.013G027000.1.v4.1 annot-version=v4.1 MIFELIIAGFAVLLLTVFILTNKGHGSLPPGPVPLPIIGHLHLLQPLIHRSFRDLCSCYGPIIYLRLGSVPCVVASTPELARELLKTNDLTFSSRKHSLA IDHLTYSSSFAFAPYGPYWRFIKKLSTFEFLGNRALNQFLPVRRKELRQFIGVLHDKSEVCESVNVTEELLNLSSNIISQIILSLRCSGTDNEAEGVRTL VREVTQIFGEFNVSDFIWFCRNLDFRGYRKKFEDVHRRYDALLENIITNREIERKKSGGEYKVKDLLDMMLDALEDKSSEVELTREHIKALVLDFITAAT DTTAAATEWALAELINNPKVLEKARQEIDTVVGNKRLVEESDSPNLPYIQAIIKETFRLHPPIPMITRKSIQESKINGYTIPKNTMLFVNIWSIGRDSRY WKNPLEFEPERFLKSEGDMVQSTASMDIKGQHYELLPFGTGRRSCPGIALALQELPVSLAAMIQCFEWKVADPHGVKIKGNALVDMTERPGLTAPRLHDL VCAPVPRPALDSFQP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.013G027000 [exp]	0	1	IFS1.31
					Potri.014G002301 [exp]	4.69	0.8497
AT3G24450			Heavy metal transport/detoxifi...		Potri.018G076400 [exp]	15.68	0.8734
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G072591 [exp]	16.85	0.8757
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.001G086700 [exp]	20.17	0.8362
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.017G110500 [exp]	20.32	0.8593
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.002G207050 [exp]	20.83	0.8204
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Potri.014G160100 [exp]	26.90	0.8677
AT5G01870			Bifunctional inhibitor/lipid-t...		Potri.016G136000 [exp]	33.24	0.8614	Pt-LTP2.2
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G072991 [exp]	34.46	0.8605
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.017G046200 [exp]	41.67	0.8499

Compare expression of checked genes

Potri.013G027000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.