Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 606 / 0 Major facilitator superfamily protein (.1.2.3) AT2G48020 493 / 1e-172 Major facilitator superfamily protein (.1.2) AT5G18840 482 / 8e-168 Major facilitator superfamily protein (.1) AT3G05150 454 / 6e-157 Major facilitator superfamily protein (.1) AT1G08920 439 / 2e-151 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT5G27360 434 / 5e-149 SFP2 Major facilitator superfamily protein (.1) AT5G27350 430 / 9e-148 SFP1 Major facilitator superfamily protein (.1) AT1G08930 430 / 3e-147 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G05400 423 / 6e-145 Major facilitator superfamily protein (.1.2) AT3G20460 423 / 1e-144 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039900 [exp] 520 / 0 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.010G026500 [exp] 510 / 6e-179 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.005G037000 [exp] 507 / 7e-178 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 495 / 3e-173 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.002G212900 [exp] 491 / 1e-171 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 489 / 6e-171 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 457 / 2e-158 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027800 [exp] 451 / 9e-156 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 372 / 1e-124 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035354 [exp] 686 / 0 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029966 [exp] 581 / 0 AT1G54730 525 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10012780 [exp] 490 / 5e-171 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10029960 [exp] 488 / 1e-169 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10029629 [exp] 465 / 2e-161 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 464 / 8e-161 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10033812 [exp] 463 / 1e-160 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 460 / 2e-155 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029962 [exp] 451 / 6e-155 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10008179 [exp] 434 / 7e-150 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.013G027500.1 pacid=42812670 polypeptide=Potri.013G027500.1.p locus=Potri.013G027500 ID=Potri.013G027500.1.v4.1 annot-version=v4.1 ATGGAAGGAGAAATATCAAGCCCTTTACTTCTCAAAGAAAGGACTCAAATACATGGTGGTGGCAGTGGAGGGGAAGAGCAGAGAGGAGGTTCTTCAGCAA CAACTATGGTGGTGTTAAGTACCCTCGTAGCTGTGTCAGGTTCATATGTTTTCGGATCAGCTATAGGATATTCATCACCTACTCAATCTGGAATCATGGA AGACCTGGGTCTCTCTGTAGCAGAGTACTCACTTTTTGGTTCAATATTGACCATTGGGGCAATGATAGGAGCAGTAATGAGTGGGAGAATAGCAGATTAT ATCGGTCGAAGAGGTACAATGGGCTTTTCAGAAATAATCTGCATTATAGGGTGGATGCTAATAACATTCTCCAAGGCTTCTTGGTGGCTTGATGTTGGAA GACTGCTTGTGGGATATGGGATGGGCCTTCTTTCTTATGTGATTCCCATATACATAGCTGAAATTACTCCTAAGAATCTTCGAGGAGGTTTTACGACAGT TCATCAGTTGATGATATGCTGTGGGGTGTCAATTACATATCTCATTGGAGCTTTCATGTCCTGGCGAAGCTTAGCTCTAATTGGAACTATTCCATGTATT GTTCAGATTGTTGGTCTATTCTTCATTCCAGAATCTCCTAGATGGTTGGCAAAGATTGGGCAAGGTAAAGAATGTGAAGTGGCTCTACAGTGCCTTAGAG GGCACAATGCTGATATTTCTGATGAAGCAGCTGAGATTAGAGATTACACAGAAACCATTCTGCAGCTTTCGGAAGCTAGTATATTTGAATTATTCCAGTG GAAATATGCTCATTCACTCATCGTTGGAGTTGGCCTGATGGTACTGCAACAATTTGGAGGGGTCAATGGCATTGCATTTTATGCAAGTTCCATATTTATA TCAGCAGGGTTCTCTGGCAGTATCGGGATGATTGCAATGGTTGTTGTTCAGATTCCAATGACAGCACTTGGAGTAGTTTTGATGGATATATCTGGACGAC GTCCTCTTTTGATGGTCTCTGCAGCAGGAACATGCTTGGGTTGCTTTCTTGCAGCATTATCGTTTTTATTGCAGTACCTTAATAAATCGGTGGCTGTCTC TCCATTTCTTGCACTTTTTGGTGTGCTGATTTATACAGGATCATTCTCACTAGGTATGGGAGGGATTCCATGGGTTATTATGTCTGAGGTCTTTCCTATA AACACGAAGGGTTCAGCTGGAAGCCTAGTGACACTAGTTAGCTGGTTAGGTTCTTGGATTATATCCTATGCTTTCAACTTCTTGATGGATTGGAGTTCAG CAGGAACGTTCTTCATATTCTCATGCATATGTGGCCTGACCGTCCTGTTTGTGGCAAAGCTGGTACCAGAGACCAAGGGGCGAACACTAGAAGAAATACA AGCATCAATGAATCCATTATCAGCGAAGAGATAA
AA sequence Show only first row Show all	>Potri.013G027500.1 pacid=42812670 polypeptide=Potri.013G027500.1.p locus=Potri.013G027500 ID=Potri.013G027500.1.v4.1 annot-version=v4.1 MEGEISSPLLLKERTQIHGGGSGGEEQRGGSSATTMVVLSTLVAVSGSYVFGSAIGYSSPTQSGIMEDLGLSVAEYSLFGSILTIGAMIGAVMSGRIADY IGRRGTMGFSEIICIIGWMLITFSKASWWLDVGRLLVGYGMGLLSYVIPIYIAEITPKNLRGGFTTVHQLMICCGVSITYLIGAFMSWRSLALIGTIPCI VQIVGLFFIPESPRWLAKIGQGKECEVALQCLRGHNADISDEAAEIRDYTETILQLSEASIFELFQWKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI SAGFSGSIGMIAMVVVQIPMTALGVVLMDISGRRPLLMVSAAGTCLGCFLAALSFLLQYLNKSVAVSPFLALFGVLIYTGSFSLGMGGIPWVIMSEVFPI NTKGSAGSLVTLVSWLGSWIISYAFNFLMDWSSAGTFFIFSCICGLTVLFVAKLVPETKGRTLEEIQASMNPLSAKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54730			Major facilitator superfamily ...		Potri.013G027500 [exp]	0	1
AT4G37280			MRG family protein (.1)		Potri.007G049300 [exp]	1.41	0.7718
AT3G14130			Aldolase-type TIM barrel famil...		Potri.003G069600 [exp]	1.41	0.7986
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Potri.006G270700 [exp]	10.95	0.6739
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Potri.017G044700 [exp]	16.97	0.6954
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.011G010901 [exp]	18.70	0.6708
AT5G47720			Thiolase family protein (.1.2....		Potri.006G004400 [exp]	19.10	0.7264
AT2G44420			protein N-terminal asparagine ...		Potri.009G023200 [exp]	21.79	0.6899
AT1G18300		ATNUDT4	nudix hydrolase homolog 4 (.1)		Potri.012G044300 [exp]	26.45	0.7269
AT5G48630			Cyclin family protein (.1.2)		Potri.014G194900 [exp]	35.00	0.7196
AT2G20210			RNI-like superfamily protein (...		Potri.014G194800 [exp]	36.33	0.7089

Compare expression of checked genes

Potri.013G027500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.