Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATBBC1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49010 347 / 4e-123 RSU2, ATBBC1 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) AT5G23900 325 / 8e-115 Ribosomal protein L13e family protein (.1) AT3G48960 307 / 1e-107 Ribosomal protein L13e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G131000 [exp] 384 / 9e-138 AT3G49010 353 / 7e-126 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Potri.016G082300 [exp] 382 / 3e-137 AT3G49010 343 / 5e-122 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Potri.003G102800 [exp] 378 / 1e-135 AT3G49010 347 / 2e-123 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013719 [exp] 352 / 4e-125 AT3G49010 352 / 3e-125 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Lus10005586 [exp] 352 / 4e-125 AT3G49010 352 / 3e-125 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Lus10009578 [exp] 350 / 2e-124 AT3G49010 351 / 5e-125 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5) Lus10020398 [exp] 350 / 2e-124 AT3G49010 351 / 5e-125 40S RIBOSOMAL PROTEIN, breast basic conserved 1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01294 [poplar] [flax] Ribosomal_L13e Ribosomal protein L13e
Representative CDS sequence Show only first row Show all	>Potri.013G027600.4 pacid=42811362 polypeptide=Potri.013G027600.4.p locus=Potri.013G027600 ID=Potri.013G027600.4.v4.1 annot-version=v4.1 ATGGTTAAGCATAACAATGTTGTGCCCAATGGACACTTCAAGAAGCACTGGCAAAACTATGTCAAGACATGGTTTAACCAACCAGCCCGAAAGACCCGCA GACGCATAGCTCGTCAGAAGAAGGCAGTCAAAATCTTTCCTCGACCTACGGCCGGACCTCTTCGACCCATTGTACATGGCCAGACTTTGAAATATAATAT GAAAGTGAGAGCTGGTAGGGGTTTTTCTCTTGAAGAACTCAAGGCTGCTGGTATTCCGAAGAAACTTGCTCCAACAATTGGAATTGCAGTTGATCACCGT CGCAGGAATCGATCTCTGGAGGGTCTCCAAGCTAATGTTCAGAGGCTGAAAACATACAAGGCCAAATTGGTTGTCTTCCCAAGACGTGCTCGCAAGTTCA AGGCTGGTGATTCTGCTCCTGAGGAACTGGCAACTGCAACCCAAGTACAAGGACAGATTATGCCTATTGTACTGGAGAAGCCATGCGTGGAGCTTGTGAA GGTCACTGAGGAAATGAAGTCATTCAGGGCTTATGACAAGCTTCGTGTGGAGCGCACGAGTGCACGCCATGTTGGTGTCAGGTTGAAGAGGGCTGCAGAA GCCGAGAAGGAAGAGAAGAAGTAG
AA sequence Show only first row Show all	>Potri.013G027600.4 pacid=42811362 polypeptide=Potri.013G027600.4.p locus=Potri.013G027600 ID=Potri.013G027600.4.v4.1 annot-version=v4.1 MVKHNNVVPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHR RRNRSLEGLQANVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGQIMPIVLEKPCVELVKVTEEMKSFRAYDKLRVERTSARHVGVRLKRAAE AEKEEKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.013G027600 [exp]	0	1	ATBBC1.1
AT5G09500			Ribosomal protein S19 family p...		Potri.002G043200 [exp]	6.24	0.9268
AT2G19740			Ribosomal protein L31e family ...		Potri.018G070100 [exp]	6.48	0.9215
AT1G73230			Nascent polypeptide-associated...		Potri.004G078300 [exp]	11.83	0.8941
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.002G141500 [exp]	13.30	0.9155	Pt-RPL15.6
AT4G25740			RNA binding Plectin/S10 domain...		Potri.017G146700 [exp]	16.85	0.9145	RPS10.3
AT4G22160			unknown protein		Potri.006G270200 [exp]	17.54	0.8196
AT4G22160			unknown protein		Potri.011G011400 [exp]	18.33	0.8131
AT5G40080			Mitochondrial ribosomal protei...		Potri.006G070700 [exp]	21.16	0.8687
AT4G10450			Ribosomal protein L6 family (....		Potri.011G147700 [exp]	21.21	0.9077	Pt-RPL9.4
AT5G24840			tRNA (guanine-N-7) methyltrans...		Potri.006G277100 [exp]	21.54	0.8318

Compare expression of checked genes

Potri.013G027600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.