Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08930 483 / 6e-168 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G54730 470 / 2e-163 Major facilitator superfamily protein (.1.2.3) AT1G08920 469 / 4e-163 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT3G05165 463 / 1e-160 Major facilitator superfamily protein (.1.2.3.4.5) AT5G27360 458 / 9e-159 SFP2 Major facilitator superfamily protein (.1) AT3G05160 456 / 5e-158 Major facilitator superfamily protein (.1.2) AT1G08900 455 / 8e-158 Major facilitator superfamily protein (.1.2.3) AT5G27350 455 / 2e-157 SFP1 Major facilitator superfamily protein (.1) AT1G08890 451 / 6e-156 Major facilitator superfamily protein (.1) AT3G20460 437 / 2e-150 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037000 [exp] 838 / 0 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G039900 [exp] 602 / 0 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027800 [exp] 582 / 0 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 527 / 0 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G040000 [exp] 456 / 1e-157 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.010G026500 [exp] 456 / 1e-157 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.014G136600 [exp] 445 / 1e-153 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.002G212900 [exp] 437 / 4e-150 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.002G259900 [exp] 337 / 4e-111 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033812 [exp] 539 / 0 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029960 [exp] 524 / 0 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 496 / 1e-173 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 490 / 2e-170 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10035356 [exp] 480 / 1e-166 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10033814 [exp] 473 / 5e-164 AT1G08920 466 / 8e-162 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Lus10029961 [exp] 469 / 1e-159 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10029964 [exp] 457 / 3e-157 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10012780 [exp] 436 / 1e-149 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10029966 [exp] 436 / 3e-149 AT1G54730 525 / 0.0 Major facilitator superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.013G027700.1 pacid=42811791 polypeptide=Potri.013G027700.1.p locus=Potri.013G027700 ID=Potri.013G027700.1.v4.1 annot-version=v4.1 ATGGAGCGGGACGGCGTAGAAGGGCTGGGATCAGCAACAAGCCCTCTACTTCTTGCTGAAAAGATCACCGGTGACAGCAACAAGCCAACCGGCGATCACT CCATCACTCCTCTTCTTGTCTTTAGCACCTTCGTTGCTCTCTGTGGTTCCTTCAGCTATGGATGTTCTGTGGGTTATTCATCTCCTGCAGAATCTGGAAT CATGGAAGATCTAGGCCTCTCTGTTGCTGCATACTCAGTTTTTGGTTCGATAGTGACCATAGGAGGAATGATAGGTGCAATCTTAAGTGGGAAGATGGCA GATCTCATCGGTCGAAGAGGAACAATGTGGATATGCCAAATAGTCTGCATGGCAGGCTGGCTAGCAATAGCATCTGCTAAGAATGCTTGGTGTGTGGACA TTGGAAGATTCGTAGTTGGAGTCGCCATAGGGATTCTTACTTATGTGGTGCCTGTATATATTTCAGAAATAACACCTAAGAATCTTAGAGGAAGATTTAC TTCGGCTACTCAGTTATTAGTATGCTGCGGCTTTGCAGTAACATTTTTCGCTGGAAGTATTGTAGGTTGGCGTGCCTTGTCTCTACTTGCTACTATTCCA AACATAGTGCAGATTGTTTGTTTGTTCTTCGTTCCAGAGTCTCCAAGATGGCTGGCAAAACTCGGTCGTGAAAAAGAGTTTGAAGCTACATTGCAACGTC TTAGGGGAACGAAATCAGATATTTCTGAAGAAGCAGCTGATATCAGAGATGCTATAGAAACTTTGAAACACACCTCAGATGAAGCTAGAACTCTAGAGTT GTTCCAGAAGAGATATGCTTATGCAATTATTGTTGGAGTAGGACTCATATTACTACAAACATTTGGAGGGAATAGTGCAGTGTCATATTATCTTGGTACC ATATTTGCTAAAGCTAATGTTTCAACCTCTGTTGGACCTATAGTTTTTGCTCTTCTACAGATTCCAATATCTATTGTAACTATACTCTTGATGGATTTAT TTGGAAGACGAACACTTCTTATGGCCTCTGCTACGGCATCATGCTTATGCTCGTTCCTTGTAGGGTTATCTTTCTGCTTCCAGGAACTCCACTATCTGAA AGAGTTCACCCCAATTTTGACAGTGGTTGGCATAATGGGTTTTGGCTGTGGTTTTGCCTTGGGCATGTCAGGAATACCTTGGGTTATAATGGCAGAGATA TTTCCTGTAAATATTAAGGCATCAGCAGGAAGCCTTGTGGTTTTAACTAGCTGGGCTAGTTCTTGGGTTCTGACATACACATTTAATTTCATGTTGGAAT GGAGTTCAGCTGGAACATTTTTCATCTTCAGTGGAATGTGTGCTTTAACTATTTCATTCATATGGAGGTTGGTGCCAGAGACAAAGGGACGGACACTGGA AGAAATACAATCAACATTAATCAGCTCATAG
AA sequence Show only first row Show all	>Potri.013G027700.1 pacid=42811791 polypeptide=Potri.013G027700.1.p locus=Potri.013G027700 ID=Potri.013G027700.1.v4.1 annot-version=v4.1 MERDGVEGLGSATSPLLLAEKITGDSNKPTGDHSITPLLVFSTFVALCGSFSYGCSVGYSSPAESGIMEDLGLSVAAYSVFGSIVTIGGMIGAILSGKMA DLIGRRGTMWICQIVCMAGWLAIASAKNAWCVDIGRFVVGVAIGILTYVVPVYISEITPKNLRGRFTSATQLLVCCGFAVTFFAGSIVGWRALSLLATIP NIVQIVCLFFVPESPRWLAKLGREKEFEATLQRLRGTKSDISEEAADIRDAIETLKHTSDEARTLELFQKRYAYAIIVGVGLILLQTFGGNSAVSYYLGT IFAKANVSTSVGPIVFALLQIPISIVTILLMDLFGRRTLLMASATASCLCSFLVGLSFCFQELHYLKEFTPILTVVGIMGFGCGFALGMSGIPWVIMAEI FPVNIKASAGSLVVLTSWASSWVLTYTFNFMLEWSSAGTFFIFSGMCALTISFIWRLVPETKGRTLEEIQSTLISS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Potri.013G027700 [exp]	0	1
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.004G039300 [exp]	3.74	0.9757
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.006G058200 [exp]	3.74	0.9757	Pt-CYP93.2
AT5G39970			catalytics (.1)		Potri.017G075800 [exp]	5.74	0.9706
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	7.21	0.9628
AT3G02100			UDP-Glycosyltransferase superf...		Potri.004G119700 [exp]	7.41	0.9637
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Potri.005G045900 [exp]	9.64	0.9515
AT2G01900			DNAse I-like superfamily prote...		Potri.015G032200 [exp]	11.31	0.9699
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	11.74	0.9692
AT2G01900			DNAse I-like superfamily prote...		Potri.012G041600 [exp]	12.36	0.9652
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.011G010000 [exp]	13.60	0.9698

Compare expression of checked genes

Potri.013G027700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.