Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27360 406 / 4e-138 SFP2 Major facilitator superfamily protein (.1) AT5G27350 397 / 1e-134 SFP1 Major facilitator superfamily protein (.1) AT1G08890 393 / 4e-133 Major facilitator superfamily protein (.1) AT1G08920 388 / 3e-131 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT1G08900 387 / 8e-131 Major facilitator superfamily protein (.1.2.3) AT3G05165 382 / 8e-129 Major facilitator superfamily protein (.1.2.3.4.5) AT3G05160 380 / 2e-128 Major facilitator superfamily protein (.1.2) AT1G08930 379 / 4e-127 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G54730 366 / 1e-122 Major facilitator superfamily protein (.1.2.3) AT3G20460 359 / 1e-119 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027700 [exp] 518 / 0 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G037000 [exp] 509 / 2e-178 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G039900 [exp] 497 / 6e-174 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 416 / 5e-142 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.010G026500 [exp] 364 / 1e-121 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 356 / 1e-118 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 356 / 1e-118 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.014G136600 [exp] 354 / 5e-118 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.002G259900 [exp] 289 / 1e-92 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033812 [exp] 462 / 4e-160 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029960 [exp] 400 / 8e-135 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 390 / 4e-132 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10035356 [exp] 389 / 5e-131 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 384 / 1e-128 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10033814 [exp] 377 / 8e-127 AT1G08920 466 / 8e-162 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Lus10012780 [exp] 348 / 4e-115 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10029964 [exp] 343 / 6e-113 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10029629 [exp] 341 / 7e-113 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029961 [exp] 343 / 7e-111 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.013G027800.1 pacid=42812714 polypeptide=Potri.013G027800.1.p locus=Potri.013G027800 ID=Potri.013G027800.1.v4.1 annot-version=v4.1 ATGGAGAAAGAGTGCATGGAAGAAGGGCTGGCAAACACTAAAAGGCCCCTGCTTCTTGGTGAAAGGAACTTCATCAACAGCGACAAACCAAAGGGCGATT CTTCCTTCACTCCGGTTCTCTTCCTTAGCGCCATTGTTGCCTTATGCGGCAACTTCTGTTTCGGATTTGCTGCTGGTTACACATCAACTGCAGAATTTGA AATGATGGAAGATTTAGGCATGTCTATTGCTGCGTACTCGTTTTTTGGTTCAATAATGACGATAGGAGCTGCGATAGGTGCTATTTTAAGTGGGAAGATG GCGGATTTCGTTGGCCGAAAACGAACAATGTGGTTATCCCAGATATTTTGCATCATGGGATGGCTTGGAATAGCATTTGCTAAGAATGTTTGGGGGGTCA ATATTGGAAGAGCATCAATTGGATTCGCAGTTGGACTTATTGCTTATGTGGTACCTGTATATATTGCAGAAATAACACCTAAAAATATTAGAGGTCGATT TGTAGTGACTCTTCAGTTGATGAACTGTTCTGGCCTCTTGGTAGTTTTTTTCCTTGGAAACTTTTTTTCATGGCGCACCGTGTCTCTATTAGCTATAATT CCATGTTTAATGCAAGTTGTCGGTTTAGTCTTCATACCAGAGTCTCCAAGATGGCTAGCATCAATTGGCAAGGAAATAGAGTTTGAAGATGCTTTGCGAC GGCTTAGAGGAGTGGATGCCGGTTTTTCTCAAGAAGCTATTGAAATCAAAGATGCTACAGAGAATTTCCAACGCAGTGAAGCTGGATTTCAAGGCTTGTT TCAAAAGAAATATGCTTATCCAGTTATGATTGGAGTAGGGTTAATGTTACTTCAACAATTGGGAGGGAACAGTGTGTTTGCAGCTTATCTTAGCACAGTG TTTGCTAAAGCTAATGTCTCAACTACCATTGGACCTACAGCAATAGCCTTCTTACAGATGCCAGCAGCTGTTTTAGGTGTGTTCTTGATGGATGCATTTG GAAGACGAGCTCTTCTTATGGTTTCTTCTGTTGCATCATGCCTGTGCCTGTCCATCATGGGGTTATCGTTCTACTTACAGGAACACCAGTATGCCAAGGA GTTCACTCCATTGATGGTGTTTCTTGGAGTACTGGGATTTTCTTATGCTTTCGCAATAGGCATGTCAGGAATACCATGGGTTATTATGTCAGAGATATTC CCAATAAACATCAAGGCCTCAGCTGGCAGCTTGGTGACTTTAGTCAATTGGTCCTGCTCATGGCTTGTGACATTTGCATTTAATTTTATGCTGGAATGGA GCTCAGCAGGAACATTTTTCTTCTTCGCTAGCATGTCTGCCATGGCATTTCTATTCACTTGGATAATGGTGCCAGAGACGAAAGGGCGTTCATTGGAAGA AATACAAGCAACATTATTAACTTATGTCTACTAA
AA sequence Show only first row Show all	>Potri.013G027800.1 pacid=42812714 polypeptide=Potri.013G027800.1.p locus=Potri.013G027800 ID=Potri.013G027800.1.v4.1 annot-version=v4.1 MEKECMEEGLANTKRPLLLGERNFINSDKPKGDSSFTPVLFLSAIVALCGNFCFGFAAGYTSTAEFEMMEDLGMSIAAYSFFGSIMTIGAAIGAILSGKM ADFVGRKRTMWLSQIFCIMGWLGIAFAKNVWGVNIGRASIGFAVGLIAYVVPVYIAEITPKNIRGRFVVTLQLMNCSGLLVVFFLGNFFSWRTVSLLAII PCLMQVVGLVFIPESPRWLASIGKEIEFEDALRRLRGVDAGFSQEAIEIKDATENFQRSEAGFQGLFQKKYAYPVMIGVGLMLLQQLGGNSVFAAYLSTV FAKANVSTTIGPTAIAFLQMPAAVLGVFLMDAFGRRALLMVSSVASCLCLSIMGLSFYLQEHQYAKEFTPLMVFLGVLGFSYAFAIGMSGIPWVIMSEIF PINIKASAGSLVTLVNWSCSWLVTFAFNFMLEWSSAGTFFFFASMSAMAFLFTWIMVPETKGRSLEEIQATLLTYVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27360		SFP2	Major facilitator superfamily ...		Potri.013G027800 [exp]	0	1
AT5G27350		SFP1	Major facilitator superfamily ...		Potri.001G226600 [exp]	1.00	0.8555
AT5G50140			Ankyrin repeat family protein ...		Potri.001G187600 [exp]	5.47	0.6075
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108701 [exp]	9.64	0.6537
AT5G38410			Ribulose bisphosphate carboxyl...		Potri.018G091401 [exp]	15.23	0.6224
AT2G38430			unknown protein		Potri.019G029800 [exp]	15.29	0.5992
AT5G63440			Protein of unknown function (D...		Potri.015G094300 [exp]	35.62	0.5210
AT2G40410			Staphylococcal nuclease homolo...		Potri.010G182500 [exp]	37.94	0.5567
AT5G38895			RING/U-box superfamily protein...		Potri.001G068700 [exp]	45.98	0.5704
AT1G51940			protein kinase family protein ...		Potri.001G190200 [exp]	51.49	0.5192
AT4G34140			D111/G-patch domain-containing...		Potri.002G197500 [exp]	57.87	0.4714

Compare expression of checked genes

Potri.013G027800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.