Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48010 497 / 4e-171 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G11050 291 / 4e-91 Protein kinase superfamily protein (.1) AT4G34440 221 / 2e-64 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G24550 220 / 5e-64 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT4G33430 219 / 6e-64 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT3G24540 214 / 6e-63 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G56145 222 / 9e-63 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G34210 216 / 1e-62 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT3G09010 210 / 1e-62 Protein kinase superfamily protein (.1) AT1G56120 221 / 2e-62 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G040200 [exp] 740 / 0 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136400 [exp] 524 / 1e-180 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 523 / 2e-180 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.004G084900 [exp] 310 / 5e-98 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 299 / 3e-94 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 298 / 1e-93 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 296 / 1e-92 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.011G072691 [exp] 229 / 2e-69 AT1G29750 514 / 2e-174 receptor-like kinase in flowers 1 (.1.2) Potri.004G040200 [exp] 226 / 7e-69 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029626 [exp] 491 / 5e-170 AT2G48010 672 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042678 [exp] 486 / 7e-166 AT2G48010 781 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027971 [exp] 465 / 2e-158 AT2G48010 646 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008187 [exp] 458 / 6e-156 AT2G48010 660 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008186 [exp] 458 / 1e-155 AT2G48010 647 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027970 [exp] 443 / 5e-150 AT2G48010 653 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042679 [exp] 441 / 1e-148 AT2G48010 678 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027972 [exp] 431 / 7e-146 AT2G48010 601 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10028549 [exp] 276 / 9e-89 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10018855 [exp] 275 / 4e-87 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G028000.2 pacid=42812627 polypeptide=Potri.013G028000.2.p locus=Potri.013G028000 ID=Potri.013G028000.2.v4.1 annot-version=v4.1 ATGAATATTACATCTCTGGCTCAGTTTGAGAGCAAATTTCCCAAATCTAAGTTGCAAGAGATGAAGCTTTATTGTAAACAATCCCTGGATGATGACCTTG TTTGTGATTATTGTACCAAGAAATTGTTGAGTCTTGGGAATCAGTATCTTCATGGTCCTCGACCTGAGAATGCCTCAGATTGTCCAGGTTATTTGTTCAT GTATACAGCTGCAGTTATTAATCAGTTTGGACCGACTGATCCCGGAACTGCAAAGTGCTTGTTCAGGCTGAAGTATTCAATGAAGTCCACAGCCTATAGG TTTCACAGTGCTGTAATTCCTGGCATTGTTGTGGGTTCCATGTTTGGAGTCGTGGGAGGCTTCATCGCAGTTTGGTTTCGCCGGACGCAACGCGGGAGAA GTGAGAAGGAAAAGGTTAGTCCTGAGGATGGCGAGGTTAGTTTGGATCTTGGGTTTGGATTGCATAGTAGAGGCACTAATTTGGTCAAATTCAGAATTGA GGAAATTAGAAAGGCAACAATGAATTTCTCTAGACATAATATTATTGGAAGGGGAGGTTATGGGAATGTTTACAAAGGGATGTTATCAGATGGGTCTGAA GTCGCCTTCAAGAGGTTCAAGAACTGTTCTGCTAGTGGTGCTGCAACTTTTGCACATGAAGTGGAAATCATAGCCAGTGTAAGGCATGTCAATCTTGTTT CTATAAGAGGCTACTGCACCACAACAGTTCCGCCAGAAGCTCCCCAAAGGATCATCGTGTGCGATTTGATGCGTAATGGAAGTCTCTACAACCATCTTTT CGAATCAGGAAAAACAAAACTTAGCTGGCCGATTCGTCAAAAGATCGCCCTTGGAACCGCAAGGGGGTTGGCTTATTTACACTATGGGGTGCATCCAGCA ATATTCCATAGGGATATCAAAGCTAGTAATATACTTTTGGATGACAGTTTTGAGCCTAAAGTTGCAGATTTTGGCCTTGCAAGGTTCAATTCACAGGGAA TGACACATTTTAGCACCAGGGTTGCCGGGACTCTCGGTTATGTTGCCCCAGAGTATGCCTTGTATGGGCAGTTAACCGAAAGAAGCGATGTCTTCGGCTT TGGTGTTGTGCTCCTTGAGCTTCTGAGTGGAAAAAAGGCTTATGAAATCAATGAAGGAAATGTTTCTCTGTTGACAGACTGGGCGTGGTCGCTAGCAAGG GAAGGGAGAGGATTGGATATTATTGAAGAAAACCTGCCTGAAATGGGATTACCAGAGGTGATGGAGCAGTATGTGCACATCGCTCTTACTTGTGCTCATC CATTGTTACATGCTAGGCCAACATTTGATCAGATTGTGAATATGTTGGAAACCAACATGCCTGTTCCCTCGTCTCTTGAAGCATACATTGCTGCTTCCAG TTTGGAAATTTGCAGTATCAGCTCAAGTTATAACTTTACTTCGTCCATCAGAGTGATGAGAACCAATTCAGACAATTTGTATGACAGGAAATTATTGCTT TTATCTCTTGTATGCCTTCCCCATTCCATCTATTCTTTTTCATGCTATAAAACTTCAGTATTAGTTCTTTCATTGTGTGAAGAATAG
AA sequence Show only first row Show all	>Potri.013G028000.2 pacid=42812627 polypeptide=Potri.013G028000.2.p locus=Potri.013G028000 ID=Potri.013G028000.2.v4.1 annot-version=v4.1 MNITSLAQFESKFPKSKLQEMKLYCKQSLDDDLVCDYCTKKLLSLGNQYLHGPRPENASDCPGYLFMYTAAVINQFGPTDPGTAKCLFRLKYSMKSTAYR FHSAVIPGIVVGSMFGVVGGFIAVWFRRTQRGRSEKEKVSPEDGEVSLDLGFGLHSRGTNLVKFRIEEIRKATMNFSRHNIIGRGGYGNVYKGMLSDGSE VAFKRFKNCSASGAATFAHEVEIIASVRHVNLVSIRGYCTTTVPPEAPQRIIVCDLMRNGSLYNHLFESGKTKLSWPIRQKIALGTARGLAYLHYGVHPA IFHRDIKASNILLDDSFEPKVADFGLARFNSQGMTHFSTRVAGTLGYVAPEYALYGQLTERSDVFGFGVVLLELLSGKKAYEINEGNVSLLTDWAWSLAR EGRGLDIIEENLPEMGLPEVMEQYVHIALTCAHPLLHARPTFDQIVNMLETNMPVPSSLEAYIAASSLEICSISSSYNFTSSIRVMRTNSDNLYDRKLLL LSLVCLPHSIYSFSCYKTSVLVLSLCEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.013G028000 [exp]	0	1
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.007G093900 [exp]	1.41	0.8204
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.001G048200 [exp]	3.16	0.7941
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G018766 [exp]	4.89	0.7897
AT3G20300			Protein of unknown function (D...		Potri.001G356200 [exp]	7.93	0.7468
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019100 [exp]	14.69	0.7258
AT5G09800			ARM repeat superfamily protein...		Potri.007G110600 [exp]	15.81	0.7411	PHOR1-2
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Potri.001G126901 [exp]	21.49	0.7209
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.005G040200 [exp]	33.76	0.7245
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.010G101100 [exp]	34.62	0.7409
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.001G364900 [exp]	41.13	0.6905

Compare expression of checked genes

Potri.013G028000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.