Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05140 548 / 0 RBK2 ROP binding protein kinases 2 (.1) AT5G18910 461 / 4e-159 Protein kinase superfamily protein (.1) AT5G35960 414 / 8e-142 Protein kinase family protein (.1) AT5G65530 399 / 2e-135 Protein kinase superfamily protein (.1) AT5G10520 373 / 4e-125 RBK1 ROP binding protein kinases 1 (.1) AT5G57670 349 / 3e-114 Protein kinase superfamily protein (.2) AT2G18890 339 / 5e-113 Protein kinase superfamily protein (.1.2) AT1G77280 270 / 9e-82 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 259 / 3e-81 Protein kinase superfamily protein (.1.2.3) AT3G24550 263 / 1e-80 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136300 [exp] 473 / 3e-165 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.010G027301 [exp] 434 / 6e-148 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.007G011700 [exp] 395 / 5e-134 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.018G096100 [exp] 369 / 8e-122 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 365 / 3e-120 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.006G166600 [exp] 341 / 9e-114 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.018G091200 [exp] 340 / 2e-113 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.002G077900 [exp] 288 / 3e-89 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.008G197800 [exp] 278 / 3e-88 AT5G18910 348 / 2e-115 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018959 [exp] 594 / 0 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10012776 [exp] 442 / 7e-150 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 439 / 3e-148 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10008192 [exp] 419 / 2e-143 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10035949 [exp] 380 / 1e-127 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10006957 [exp] 347 / 1e-116 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10012727 [exp] 349 / 5e-114 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10019990 [exp] 347 / 8e-113 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10025713 [exp] 330 / 8e-109 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10000968 [exp] 280 / 8e-86 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.013G028100.1 pacid=42812401 polypeptide=Potri.013G028100.1.p locus=Potri.013G028100 ID=Potri.013G028100.1.v4.1 annot-version=v4.1 ATGGCAGCTGTTGGAGGACATAACAAAGCTGCTCATAGTAGTACTCTTCCTTGGTACAGGGAGGGTTCGAAGGAGTATTGCTTACTATCAGAGAGAAATC TGCATGCAAAAGTTTCAGTGAAACCTAAGAAACACAGTCCAGTGATTTCTTCCTCTGCTTCTTCCGTTGACTTGAGAGCTTCAGACATGGAAAGAGAGAG ACAAGATGGATCATCTCCTAGAGGAGTTATAGAAGCTTGCTTAACAGGCTTGGAATCCAACTCAGATTTTACTAGAAACAGCACTGCAGAATCAGAAGTT CCTCGTTCGAAGGCACATTCGAACTGGAGTAGATTCTTCAAGTCATGGAAAAGATTTTCGCTAAAACACTTGACTTCACCTCCTCCAGTGCCCAAGGAAC CAAAACGTAAGAGCAGGAGTACAAGAGAGAACACAGTTCTGAGAAATTTATACAACTTCAAGTCGACCTTGCAGCATTTCACTTTTGCGGAGCTCAAAAT GGCAACAAACAATTTTAACCACGAGAATTTAATTGGAAAAGGTGGTTTTGCTGAGGTTTACAAAGGTTGTTTGCCTGATGGAAGGCTGGTAGCCATAAAG CAGCTGACAAAAGGAACTCTTGATGAGAAGACTGCTGGCTTTCTAAATGAGCTAGGCATTATAGCTCATGTTGACCATCCTAATACTGCTAAGCTGCTTG GGTGTGGCATTGATGGGGGGATGCACCTTGTTTTTGAATTGTCTCCATTAGGGAGTTTAGGATCTGCTCTTCATGGTTCACAAGTCGAGCTTGATTGGAG TAAAAGGTACAAAATTGCTCTTGGGGCAGCAGATGGACTGCTGTATCTTCATGAGAATTGCCGAAGGCGAATCATCCACAGAGATATAAAGGCCGATAAT ATTCTTCTTACAAAGAATTTTGAGCCTCAGATTTGTGATTTCGGACTAGCAAAGTGGCTACCAACACAGTGGACTCACCATAATGTATCCAAATTTGAAG GCACATTCGGCTACTTTGCACCCGAATACTATATGCATGGCATAGTTGATGAAAAAACCGATATCTATGCATTTGGGGTATTACTTTTGGAGCTCATAAC AGGGCGTCGACCTGTGGATCGTTTACAACAAAGCCTTGTGGTTTGGGCAAAGCCTTTGCTGGATAACAACGATACTAAGGAGCTTGCTGACCCTTCTCTT GGTGACAACTATGATCTAGAAGAGATGGATCGTGTGGTTTTGACCGCCTCTTTGTGCATTGAGCAGTCTCCAGTCCTACGCCCTCGAATGAGTCAGGTTG TGATCCTACTAAGAGGTGATGAATATGTCTCTGAGCGTGCCAAAAAAGGTAAAGGTCGTGCTCTCCTAAGAACTTACTCAGAAGAAATCTTCGACGCTCA AGACTACAACTCAACTAGGTATCTCAACGATCTCAAACGATACAAAGAGCTTGCTTTGGGTTCTTGA
AA sequence Show only first row Show all	>Potri.013G028100.1 pacid=42812401 polypeptide=Potri.013G028100.1.p locus=Potri.013G028100 ID=Potri.013G028100.1.v4.1 annot-version=v4.1 MAAVGGHNKAAHSSTLPWYREGSKEYCLLSERNLHAKVSVKPKKHSPVISSSASSVDLRASDMERERQDGSSPRGVIEACLTGLESNSDFTRNSTAESEV PRSKAHSNWSRFFKSWKRFSLKHLTSPPPVPKEPKRKSRSTRENTVLRNLYNFKSTLQHFTFAELKMATNNFNHENLIGKGGFAEVYKGCLPDGRLVAIK QLTKGTLDEKTAGFLNELGIIAHVDHPNTAKLLGCGIDGGMHLVFELSPLGSLGSALHGSQVELDWSKRYKIALGAADGLLYLHENCRRRIIHRDIKADN ILLTKNFEPQICDFGLAKWLPTQWTHHNVSKFEGTFGYFAPEYYMHGIVDEKTDIYAFGVLLLELITGRRPVDRLQQSLVVWAKPLLDNNDTKELADPSL GDNYDLEEMDRVVLTASLCIEQSPVLRPRMSQVVILLRGDEYVSERAKKGKGRALLRTYSEEIFDAQDYNSTRYLNDLKRYKELALGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05140		RBK2	ROP binding protein kinases 2 ...		Potri.013G028100 [exp]	0	1
AT3G57830			Leucine-rich repeat protein ki...		Potri.006G057500 [exp]	4.12	0.8710
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.018G051400 [exp]	5.47	0.9097
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Potri.006G220100 [exp]	7.87	0.9044
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077500 [exp]	8.94	0.8839
AT1G60870		MEE9	maternal effect embryo arrest ...		Potri.006G003600 [exp]	12.32	0.8681
AT5G48270			Plant protein of unknown funct...		Potri.010G047700 [exp]	13.03	0.8920
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	14.89	0.8908
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.001G058600 [exp]	14.96	0.8870
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Potri.014G106300 [exp]	15.87	0.8853
AT5G04370		NAMT1	S-adenosyl-L-methionine-depend...		Potri.019G022200 [exp]	17.66	0.8920

Compare expression of checked genes

Potri.013G028100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.