Plant FIBer expression Database

Potri.013G028600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G27330 289 / 5e-89 Prefoldin chaperone subunit family protein (.1)
AT3G05130 278 / 9e-85 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G040500
[exp]
759 / 0 AT5G27330 247 / 2e-73 Prefoldin chaperone subunit family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002255
[exp]
152 / 6e-39 AT3G05130 156 / 2e-40 unknown protein
Lus10000927
[exp]
151 / 8e-39 AT3G05130 150 / 1e-38 unknown protein
PFAM info
Representative CDS sequence
>Potri.013G028600.1 pacid=42810743 polypeptide=Potri.013G028600.1.p locus=Potri.013G028600 ID=Potri.013G028600.1.v4.1 annot-version=v4.1
ATGGCAAAAAAGAAAGCGACCCATCAAACCCAAGACCCCAAGCAAGAGAACCCACAAGATCAAAATCGAAACTTAAACACCCAGAATCAACAACCACCAC
CCTCCATGGAAAACCCTAATGAAAAGTTTCAATCTTTGAAGACTCTCAATGATTTGCTTGTCAAAGAAGCGAAAAAACGCCGAGAACAAGTTGAGTCTCT
GGTGAAAGCTAAGGAGGCTTTGGAGACTGAGTTGGCTCTGTCTAGTAACGAAAAGAGTAAGTTGGAGACTGAGTTGGGTAAAATCAGTGATGGGAAAGTG
AGTTTGGAGATAGAAAAGGGGTTGTTTTGTGTTTTTATTGAGACACAGATGGCTGAAATGGGTGGTTTTGTAGATGGTTTGGTGAGAGAAAAGAAAGAGA
AGGAAAATGAGATTGGGGTCTTGAAGAGTGAGGTTAAGGAGCTAACGATGAGTGTTGAGGCTGAGAGAGATAGATTGAGTCGGGTTTGTCTCGAGAGGGA
TCTGTTGAAGAGTGATGTTGATAATTGGATGAAGGAGGCTGATGGTTTGAAAGATAGAGTGATTGAATTAGAGAAGAGGGAGAGGGAGAGCGAGGAAGAG
ATTGAGAAACTGAAGAAAGAATATGCTTTGTTGGTTAAGGAAAAGAAGGATAGAGAGAAAGAAATCGAGGAGCTTAAAAGGTTGAGAGGTTCGGCTGAGA
ATAATTTGATGGAGAGAGTGGAAGAAATTGAGTATTTGAAGCGAGAGATTGAGGGGATTGTGAGGGAAAGGAATGAGATTGGTGTTGAAAAAAGTGAGCA
TAAGTTGAAGATTATTGAGTTGGAGAGAGAAGCAGGGGAACTTAATGAGATTGTATCAAATTTGCGAAAGGAGGAGGGAATTTTGCGCAAAAAAGTTATG
AAATTGGAGGAGACTTTGGGGGAGGCGCTGGAGAAAAAGAATGCAATGGCAAGGGAAATTGATGGTTTGATGGAAGAGAAGAAGGAAAAGGAAAGAACTA
TTATGCGGTTAATGGAGGAAAATGATGCTGGCCAGAAATATAAGATCATGGCTAATGCTGAAATTGAGGATAAGAAAGGATTGGTTCAGAAATTGTTGAG
AGAGAAGAATGAGATTGAGGAAGTGAAAGTTATTAAGGAGGGTGAAATTGAGAAGCTGCATAAGGAGGTGGGTCATTTAAGGGATGATATTTTTTCGATG
CAAGAATCCATCAAGGATCAGGAAGTTAAGTACAAACAAGTAGCTTCTGAAATTAGTCATTACAAAGGTGCTCTTGAGCAAGTAAGGCTTGAGAGGGATA
ATGCTCAAAAGAGTTTGGATGGGGAGAAAAGGATTGGCATGAATTTGAGGTCTAAAGTTTTGGAGATGGAGAAGAGAGTTGAAGAAACTGTGAAGGATTG
TGCAAAGATGAAAAGCGAGCATGAGAATCTGGCCAAGCAGAAGAAGGAAATGGAAACCCAAGTTTCTTTGCTGGAGAAGGAAAAAGATTTGGTACAAAAG
CATCTCACAGAGGCAGAGGGGAAAATAATTGACTTGAGGAACAAAATGGAGTCCGCTGGCACTATTTCAGATAGAGCACTAACCATGTTGAAGAGCACTG
TTGCATTGTTGTGTGAATCGAACAATGGAAAAGAAGAGATGACTGTTACTGAAAAGATGCTTGACAGTGAAATTGAACCGTATGCAAGTGAGCTGGAAGT
TATCAAGACTGCTTTTAGAAACAAGGAGACAATGGTGGAGGACATGAAGCAGCAAGTAGAATACCTGAGGGATTCTGTGGCAAGGGCAAAGAAGAAGAAC
GGCCTTTTGAGTGTAATGTCTTCGGCAACTACAGTTGTCGCTGCAGCAGTTTCTCTTGCATATGTTGCTAGAGTACGTTGA
AA sequence
>Potri.013G028600.1 pacid=42810743 polypeptide=Potri.013G028600.1.p locus=Potri.013G028600 ID=Potri.013G028600.1.v4.1 annot-version=v4.1
MAKKKATHQTQDPKQENPQDQNRNLNTQNQQPPPSMENPNEKFQSLKTLNDLLVKEAKKRREQVESLVKAKEALETELALSSNEKSKLETELGKISDGKV
SLEIEKGLFCVFIETQMAEMGGFVDGLVREKKEKENEIGVLKSEVKELTMSVEAERDRLSRVCLERDLLKSDVDNWMKEADGLKDRVIELEKRERESEEE
IEKLKKEYALLVKEKKDREKEIEELKRLRGSAENNLMERVEEIEYLKREIEGIVRERNEIGVEKSEHKLKIIELEREAGELNEIVSNLRKEEGILRKKVM
KLEETLGEALEKKNAMAREIDGLMEEKKEKERTIMRLMEENDAGQKYKIMANAEIEDKKGLVQKLLREKNEIEEVKVIKEGEIEKLHKEVGHLRDDIFSM
QESIKDQEVKYKQVASEISHYKGALEQVRLERDNAQKSLDGEKRIGMNLRSKVLEMEKRVEETVKDCAKMKSEHENLAKQKKEMETQVSLLEKEKDLVQK
HLTEAEGKIIDLRNKMESAGTISDRALTMLKSTVALLCESNNGKEEMTVTEKMLDSEIEPYASELEVIKTAFRNKETMVEDMKQQVEYLRDSVARAKKKN
GLLSVMSSATTVVAAAVSLAYVARVR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G27330 Prefoldin chaperone subunit fa... Potri.013G028600
[exp]
0 1
AT1G18170 FKBP-like peptidyl-prolyl cis-... Potri.012G048300
[exp]
3.87 0.9437
AT4G08570 Heavy metal transport/detoxifi... Potri.005G003700
[exp]
13.03 0.9213
AT2G45330 TRPT, EMB1067 2' tRNA phosphotransferase, em... Potri.002G117000
[exp]
20.66 0.8871
AT1G60470 ATGOLS4 galactinol synthase 4 (.1) Potri.010G042000
[exp]
23.87 0.9133
AT3G27750 EMB3123 EMBRYO DEFECTIVE 3123, unknown... Potri.003G051400
[exp]
24.00 0.9266
AT2G03050 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH AC... Potri.010G167400
[exp]
28.84 0.9074
AT4G28025 unknown protein Potri.006G175600
[exp]
29.08 0.9149
AT5G63290 Radical SAM superfamily protei... Potri.012G092900
[exp]
29.66 0.9127
AT3G46750 unknown protein Potri.001G243900
[exp]
31.46 0.9029
AT4G20360 AtRab8D, AtRABE... RAB GTPase homolog E1B (.1) Potri.001G110200
[exp]
33.88 0.9240

Potri.013G028600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.