Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27320 610 / 0 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 592 / 0 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 529 / 0 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 221 / 2e-69 ATCXE18 carboxyesterase 18 (.1) AT1G68620 152 / 4e-43 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 149 / 2e-41 ATCXE17 carboxyesterase 17 (.1) AT5G06570 137 / 1e-37 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G62180 136 / 6e-37 ATCXE20 carboxyesterase 20 (.1) AT1G47480 135 / 7e-37 alpha/beta-Hydrolases superfamily protein (.1) AT5G14310 137 / 1e-36 ATCXE16 carboxyesterase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G040600 [exp] 661 / 0 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G213100 [exp] 566 / 0 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 555 / 0 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.019G014302 [exp] 259 / 3e-84 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.001G459400 [exp] 250 / 6e-81 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.004G092500 [exp] 243 / 5e-78 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.004G101400 [exp] 168 / 7e-49 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.001G032400 [exp] 167 / 8e-49 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 164 / 1e-47 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000928 [exp] 585 / 0 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 578 / 0 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 535 / 0 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10018963 [exp] 383 / 7e-134 AT5G27320 365 / 3e-127 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10039162 [exp] 234 / 3e-74 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10013774 [exp] 225 / 1e-70 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10008189 [exp] 199 / 1e-63 AT3G63010 206 / 4e-67 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10024087 [exp] 165 / 9e-48 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10013377 [exp] 173 / 1e-47 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008439 [exp] 164 / 2e-47 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07859 [poplar] [flax] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.013G028700.2 pacid=42812285 polypeptide=Potri.013G028700.2.p locus=Potri.013G028700 ID=Potri.013G028700.2.v4.1 annot-version=v4.1 ATGGCTGGAAGTAATGAAGTCAATCTCAATGAAAGCAAGATGGTGGTACCCCTGAACACATGGGTCCTCATATCAAATTTCAAGCTGGCTTACAATCTTC TTCGTCGTCCTGATGGGACTTTCAACCGCCACTTGGCAGAGTTCCTTGACCGGAAAGTTCCTGCCAACGCAAATGCAGTTGATGGGGTTTTCTCATTTGA TGTTATCATTGACCGTGGGACTAGTCTTCTTAGCCGGATCTATCGACAGGCTGATGCGCAAGTATCACAACCAAATATTGTTGACCTTGAGAAGCCTAAC AACTTGGATGTTGTCCCTGTCATAATCTTCTTTCATGGTGGAAGCTTTGCTCACTCTTCTGCAAACAGTGCTATATATGATACACTCTGTCGCCGCCTGG TGGGCCTTTGCAAGGCTGTGGTAGTGTCTGTGAATTATAGGCGTGCACCTGAAAATCGATACCCATGTGCTTATGATGATGGATGGACTGCTCTGAAGTG GGTTAATTCAAGGGCATGGCTCCAGAGTAAGAAAGACTCTAAAGTTCATATATACTTGGCTGGGGATAGCTCTGGTGGTAACATTGTTCACCATGTTGCT TCAAGAGCAGTAGAATCAGGAATTGAAGTATTGGGCAACATGCTGCTGAACCCAATGTTTGGTGGGAAAGAGAGAACAGAATCGGAGAAGCGATTAGATG GCAAATATTTTGTAACTCTCCAGGACCGAGATTGGTACTGGAGAGCATTTCTTCCTGAAGGAGAAGATAGGGACCATCCAGCATGTAATCCATTTGGTCC AAAAGGTAAAAGCCTTGAGGGAATGAAATTCCCCAAGAGTCTTGTTGTGGTGGCTGGTTTAGATCTTGTTCAGGACTGGCAATTGGCATATGCTGAAGGT CTCAAGAAGGCTGGTCAAGATGTGAAACTTTTATATCTGGAGCAAGCAACAATAGGGTTCTACTTGTTACCCAATAACAATCACTTCCATACAGTGATGA ATGAGATAAGTGAATTTATGACTCAAGCTTGCGGAAGACCTGCAGCTCCTGTTTTATTTCTTGAAGACACTTTGCAAGGCACAGTAACCCAAATGTGA
AA sequence Show only first row Show all	>Potri.013G028700.2 pacid=42812285 polypeptide=Potri.013G028700.2.p locus=Potri.013G028700 ID=Potri.013G028700.2.v4.1 annot-version=v4.1 MAGSNEVNLNESKMVVPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVPANANAVDGVFSFDVIIDRGTSLLSRIYRQADAQVSQPNIVDLEKPN NLDVVPVIIFFHGGSFAHSSANSAIYDTLCRRLVGLCKAVVVSVNYRRAPENRYPCAYDDGWTALKWVNSRAWLQSKKDSKVHIYLAGDSSGGNIVHHVA SRAVESGIEVLGNMLLNPMFGGKERTESEKRLDGKYFVTLQDRDWYWRAFLPEGEDRDHPACNPFGPKGKSLEGMKFPKSLVVVAGLDLVQDWQLAYAEG LKKAGQDVKLLYLEQATIGFYLLPNNNHFHTVMNEISEFMTQACGRPAAPVLFLEDTLQGTVTQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.013G028700 [exp]	0	1
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Potri.002G074700 [exp]	1.00	0.7995
AT2G27310			F-box family protein (.1)		Potri.005G208200 [exp]	2.23	0.7439
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.009G048700 [exp]	6.00	0.7407	Pt-SCL3.1
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.003G185050 [exp]	6.92	0.7442
AT4G19190			zinc knuckle (CCHC-type) famil...		Potri.004G236300 [exp]	10.19	0.7266
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Potri.006G222800 [exp]	14.00	0.6725
AT3G13780			SMAD/FHA domain-containing pro...		Potri.001G196700 [exp]	17.49	0.7533
AT5G61450			P-loop containing nucleoside t...		Potri.003G108000 [exp]	18.65	0.7194
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Potri.006G075300 [exp]	19.89	0.6606
AT1G24440			RING/U-box superfamily protein...		Potri.010G052700 [exp]	21.42	0.7255

Compare expression of checked genes

Potri.013G028700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.