Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54690 220 / 4e-75 HTA3 ,G-H2AX ,GAMMA-H2AX ,H2AXB histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) AT1G08880 218 / 2e-74 HTA5 ,G-H2AX ,GAMMA-H2AX ,H2AXA histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) AT4G27230 167 / 2e-54 HTA2 histone H2A 2 (.1.2) AT5G54640 165 / 1e-53 ATHTA1, HTA1, RAT5 RESISTANT TO AGROBACTERIUM TRANSFORMATION 5, histone H2A 1, Histone superfamily protein (.1) AT1G51060 163 / 6e-53 HTA10 histone H2A 10 (.1) AT3G20670 162 / 2e-52 HTA13 histone H2A 13 (.1) AT5G59870 143 / 1e-44 HTA6 histone H2A 6 (.1) AT5G27670 136 / 5e-42 HTA7 histone H2A 7 (.1) AT5G02560 135 / 2e-41 HTA12 histone H2A 12 (.1.2) AT2G38810 93 / 6e-25 HTA8 histone H2A 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G040800 [exp] 237 / 6e-82 AT1G54690 221 / 2e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Potri.005G040700 [exp] 218 / 3e-74 AT1G08880 183 / 2e-60 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.013G028800 [exp] 196 / 1e-65 AT1G08880 190 / 2e-63 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.004G031300 [exp] 167 / 2e-54 AT1G08880 150 / 6e-48 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.011G131400 [exp] 165 / 1e-53 AT1G51060 200 / 1e-67 histone H2A 10 (.1) Potri.001G415700 [exp] 164 / 9e-53 AT1G51060 174 / 1e-56 histone H2A 10 (.1) Potri.006G082300 [exp] 140 / 1e-43 AT5G02560 143 / 2e-44 histone H2A 12 (.1.2) Potri.013G018200 [exp] 137 / 2e-42 AT5G27670 160 / 4e-51 histone H2A 7 (.1) Potri.005G026500 [exp] 135 / 1e-41 AT5G27670 145 / 2e-45 histone H2A 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039691 [exp] 211 / 1e-71 AT1G54690 249 / 1e-86 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10027154 [exp] 211 / 1e-71 AT1G54690 249 / 1e-86 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10002253 [exp] 202 / 3e-68 AT1G54690 244 / 9e-85 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10028044 [exp] 197 / 6e-66 AT1G08880 238 / 4e-82 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Lus10003750 [exp] 196 / 2e-65 AT1G54690 239 / 7e-83 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10042960 [exp] 167 / 2e-54 AT1G51060 243 / 2e-84 histone H2A 10 (.1) Lus10032464 [exp] 166 / 1e-53 AT1G51060 240 / 2e-83 histone H2A 10 (.1) Lus10005444 [exp] 140 / 1e-43 AT5G02560 234 / 2e-80 histone H2A 12 (.1.2) Lus10004945 [exp] 140 / 2e-43 AT5G02560 233 / 5e-80 histone H2A 12 (.1.2) Lus10040853 [exp] 140 / 3e-43 AT5G02560 228 / 4e-78 histone H2A 12 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF00125 [poplar] [flax] Histone Core histone H2A/H2B/H3/H4 CL0012 [poplar] [flax] PF16211 [poplar] [flax] Histone_H2A_C C-terminus of histone H2A
Representative CDS sequence Show only first row Show all	>Potri.013G028900.1 pacid=42810790 polypeptide=Potri.013G028900.1.p locus=Potri.013G028900 ID=Potri.013G028900.1.v4.1 annot-version=v4.1 ATGAGTTCGAAGGAAGGAGGCGCGTCTACTAAGGGAGGAAGAGGTAAACCAAAGGCATCTAAGTCCGTGTCGAGATCACAGAAAGCAGGGTTGCAATTTC CAGTAGGGAGGATTGCTAGGTTCTTGAAGGCTGGTAAATATGCTGAACGTGTTGGTGCTGGTGCTCCTGTCTATCTCGCCGCTGTCCTCGAGTATCTCGC TGCCGAGGTGCTTGAGTTAGCTGGGAATGCAGCGAGAGATAATAAGAAGAATCGTATAGTGCCAAGGCACATTCAGCTTGCAGTAAGGAACGACGAGGAA TTAAGCAAGCTATTGGGGTCAGTTACAATTGCTAATGGAGGTGTTTTGCCTAATATTCACCAGACACTTCTTCCCAAGAAGATGGGCAAAGGAAAGGGTG ACATTGGATCTGCTTCTCAGGAGTTTTAG
AA sequence Show only first row Show all	>Potri.013G028900.1 pacid=42810790 polypeptide=Potri.013G028900.1.p locus=Potri.013G028900 ID=Potri.013G028900.1.v4.1 annot-version=v4.1 MSSKEGGASTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEE LSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Potri.013G028900 [exp]	0	1
AT4G22860			Cell cycle regulated microtubu...		Potri.012G130300 [exp]	9.16	0.8089
AT3G17350			unknown protein		Potri.008G099800 [exp]	11.40	0.8475
					Potri.010G206700 [exp]	11.66	0.8220
AT4G38660			Pathogenesis-related thaumatin...		Potri.009G132500 [exp]	15.03	0.8427
AT1G79760		DTA4	downstream target of AGL15-4 (...		Potri.001G189400 [exp]	15.39	0.8273	DTA4.1
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.004G168800 [exp]	23.76	0.8178	VCCYP.1
AT3G17365			S-adenosyl-L-methionine-depend...		Potri.010G153200 [exp]	36.87	0.8060
AT3G50410	DOF	OBP1, AtDof3. 4	OBF binding protein 1 (.1)		Potri.007G036400 [exp]	39.88	0.7746	Pt-OBP1.1
AT1G68350			unknown protein		Potri.010G122600 [exp]	41.15	0.7901
AT2G27970		CKS2	CDK-subunit 2 (.1)		Potri.004G217500 [exp]	44.09	0.7618

Compare expression of checked genes

Potri.013G028900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.