Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32910 187 / 7e-51 DCD (Development and Cell Death) domain protein (.1) AT5G61910 112 / 8e-26 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT2G35140 77 / 3e-14 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) AT5G01660 71 / 1e-12 unknown protein AT3G11000 67 / 1e-11 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT5G42050 63 / 2e-10 DCD (Development and Cell Death) domain protein (.1) AT3G27090 53 / 2e-07 DCD (Development and Cell Death) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043100 [exp] 773 / 0 AT2G32910 201 / 6e-56 DCD (Development and Cell Death) domain protein (.1) Potri.005G042700 [exp] 728 / 0 AT2G32910 198 / 3e-55 DCD (Development and Cell Death) domain protein (.1) Potri.001G136300 [exp] 128 / 4e-32 AT5G61910 180 / 2e-50 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.015G122300 [exp] 77 / 2e-14 AT2G35140 211 / 4e-56 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Potri.016G127600 [exp] 72 / 4e-13 AT5G01660 628 / 0.0 unknown protein Potri.008G074200 [exp] 66 / 7e-11 AT5G01660 488 / 2e-164 unknown protein Potri.003G141900 [exp] 57 / 2e-08 AT5G42050 285 / 4e-94 DCD (Development and Cell Death) domain protein (.1) Potri.001G088800 [exp] 57 / 3e-08 AT5G42050 289 / 2e-95 DCD (Development and Cell Death) domain protein (.1) Potri.001G330300 [exp] 53 / 2e-07 AT3G27090 424 / 6e-151 DCD (Development and Cell Death) domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004128 [exp] 233 / 7e-66 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1) Lus10001728 [exp] 206 / 2e-57 AT2G32910 208 / 1e-57 DCD (Development and Cell Death) domain protein (.1) Lus10032534 [exp] 115 / 4e-27 AT5G61910 169 / 3e-45 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Lus10018316 [exp] 78 / 9e-15 AT2G35140 185 / 3e-48 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Lus10017137 [exp] 78 / 1e-14 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10012220 [exp] 68 / 1e-11 AT5G01660 224 / 1e-66 unknown protein Lus10018307 [exp] 59 / 6e-09 AT5G01660 276 / 3e-82 unknown protein Lus10032412 [exp] 59 / 7e-09 AT5G42050 359 / 1e-123 DCD (Development and Cell Death) domain protein (.1) Lus10023059 [exp] 58 / 8e-09 AT5G42050 355 / 8e-122 DCD (Development and Cell Death) domain protein (.1) Lus10012533 [exp] 56 / 3e-08 AT3G27090 432 / 5e-154 DCD (Development and Cell Death) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10539 [poplar] [flax] Dev_Cell_Death Development and cell death domain
Representative CDS sequence Show only first row Show all	>Potri.013G029200.4 pacid=42812611 polypeptide=Potri.013G029200.4.p locus=Potri.013G029200 ID=Potri.013G029200.4.v4.1 annot-version=v4.1 ATGGAACAAGAGTTTAACAATACAAAAGCTGAGAATCTGGCTGAAGTCTCCATGAAATCGCAGTCAATGGATAATAACAATCTGGAAACTGAGAATCCTA CAGAAGCATTGTCTAAGTCACTGTCTGAAACGAACAACAATGAAGATGGAAATCATGCTGAAGCGTCAACTAAAGATCAATCATCCAGAAAAAGAACCCC CAAACCATTGAGGGCTAATTCTATAGCTATAAAAAAATCTTCAACTAGCAATTCTTTGAAGTCCAAGAAAGCTAAAAGCAGTCCAAAAATTCAAGGAAAA AACAGAAAGAAGAATCTCTTACAAAGCAACGAAGAAAGTAGAAAAAATGAGCATGGTGATGCTAAAAACCTAAATTCAAGTGAAAAGAACGTTTCTGACA AAGAGCGCATTGAGAAGGGCCAAGAGAATCAAAAGAACCAAGAAAGGTTAGTTGGGTCAAATAAGGGTCGAAAGAACCAAAAGAGGGAAGAAAAGCTTGG TGGCTCAGATAAAAGCTCAACGAGTGAAAAAAACAAAGGGAAACTTGATGGGAAAGAAAAGAATGAACAGGATGAGAAGAAGAAAGAAAAGCTTGGTGGT ATGATCTTTATGTGCAGTGCAAAGACAAAGCCAGATTGCTTCCGCTATCGTGTCATGGGTGTCACAATGAATAAAAAGGAACTCATATTGGGTGTGAAAC CTGGACTTAAGCTTTTCCTGTATGATTTTGATCTGAAACTTATGTATGGTATCTATGAAGCATCCTCTTCTGGTGGAGTAAAATTGGAGCCCAGGGCATT TGGTGGTTCCTTTCCAGTTCAGGTGCGTTTTGATGTTCACAAGGACTGCTATCCAATCAATGAGAGTGTTTTCAAGAAGGCTATAAAGGACAACTATAAT GAGAAGAACAAGTTTAAAACAGAACTTACTGTTCAGCAGGTTCGGAAGCTCAGTGCACTATTCCCACCAGTTAGAGCGCCTGTCCACTCTCCACTAACTG TAACTGTTCAGGATAGAGAACTTTATGCGGGAGCAAGAGAGTTGCGGATCCATTCAGATAGGAAAGCATTTGCTAGAGCCAATTATGATGCTAGAAGTTA TCCTGTGCTCTCTGATGTAAGGGATCGACGTGTTGAGTACAGGGAGGTGGGCTCTACACAAAGAGATGAGATTCCACGTGATTTATTTATGAGTGAAAAG GATTATCGAACTTATGGCCTTTCAGGAGAGAGAAGAACTTATGGCCTTTCAGGAGAGGGAATAAACTTGCCTCCCTCTCTTCATATGTCGTCTACTCTAG ACCCATACTCGAGAGACCAGGAAAGAGAGCACCTTCTTAGACAGCCTTACCCTATATACAGAGACATGGTACCTTTGCAGAGAGAAGCTGTTGTGGCCGA TCCTTTCTACTTGAATCAGGCATATAATCCTGGTGGTATACGTGAATTGCTGCCAGCTACTACTTCGATAACCGCAACTACATCTGGTTCTTCTCTCCCT GCTTTGGACCCATATACAAGGGATCCATATTATACTTACCATTATGGTGCTTCATCTGCAGATGCATATCTGCCACCTCCAAGGAGAGATGAAGTTTCTT CAGGTTCCTATTATGCTGATGGTCCTAGAGAGACTTGCCTATTTGAGGCTGATCACTTGCGTAGGAGGGCAACTGATCAAGTGGATAGATTATACTCAAC AAATGCTGCTGATGCCTCATCAAATTATAACCAGCTACTCCAGTACCATGGAGCCAAGCCTGAAACCGCACCTCCATCAGTTTCATCTCGGTACTCCTTT GCCGGTCCATCCGTCCCTTATCGCTAA
AA sequence Show only first row Show all	>Potri.013G029200.4 pacid=42812611 polypeptide=Potri.013G029200.4.p locus=Potri.013G029200 ID=Potri.013G029200.4.v4.1 annot-version=v4.1 MEQEFNNTKAENLAEVSMKSQSMDNNNLETENPTEALSKSLSETNNNEDGNHAEASTKDQSSRKRTPKPLRANSIAIKKSSTSNSLKSKKAKSSPKIQGK NRKKNLLQSNEESRKNEHGDAKNLNSSEKNVSDKERIEKGQENQKNQERLVGSNKGRKNQKREEKLGGSDKSSTSEKNKGKLDGKEKNEQDEKKKEKLGG MIFMCSAKTKPDCFRYRVMGVTMNKKELILGVKPGLKLFLYDFDLKLMYGIYEASSSGGVKLEPRAFGGSFPVQVRFDVHKDCYPINESVFKKAIKDNYN EKNKFKTELTVQQVRKLSALFPPVRAPVHSPLTVTVQDRELYAGARELRIHSDRKAFARANYDARSYPVLSDVRDRRVEYREVGSTQRDEIPRDLFMSEK DYRTYGLSGERRTYGLSGEGINLPPSLHMSSTLDPYSRDQEREHLLRQPYPIYRDMVPLQREAVVADPFYLNQAYNPGGIRELLPATTSITATTSGSSLP ALDPYTRDPYYTYHYGASSADAYLPPPRRDEVSSGSYYADGPRETCLFEADHLRRRATDQVDRLYSTNAADASSNYNQLLQYHGAKPETAPPSVSSRYSF AGPSVPYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32910			DCD (Development and Cell Deat...		Potri.013G029200 [exp]	0	1
AT3G58050			unknown protein		Potri.006G194500 [exp]	4.12	0.7631
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Potri.010G039900 [exp]	5.19	0.7170	ALA3.3
AT3G58110			unknown protein		Potri.019G091700 [exp]	12.64	0.7412
					Potri.012G020400 [exp]	15.81	0.6711
AT2G25430			epsin N-terminal homology (ENT...		Potri.018G026900 [exp]	20.78	0.6339
AT4G25670			unknown protein		Potri.004G079900 [exp]	26.68	0.6782
AT2G39260			binding;RNA binding (.1)		Potri.010G216100 [exp]	28.01	0.6901
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.010G227200 [exp]	30.74	0.6500
AT1G49520			SWIB complex BAF60b domain-con...		Potri.009G106700 [exp]	31.81	0.7071
AT2G35540			DNAJ heat shock N-terminal dom...		Potri.003G097800 [exp]	36.90	0.6874

Compare expression of checked genes

Potri.013G029200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.