Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DHQD3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06350 516 / 5e-179 EMB3004, MEE32 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043400 [exp] 909 / 0 AT3G06350 508 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.014G135500 [exp] 540 / 0 AT3G06350 444 / 8e-151 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.010G019000 [exp] 494 / 2e-171 AT3G06350 736 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029800 [exp] 475 / 6e-164 AT3G06350 630 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.008G196100 [exp] 196 / 3e-59 AT3G06350 326 / 1e-108 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.017G103401 [exp] 39 / 0.0003 AT3G06350 59 / 2e-12 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001725 [exp] 671 / 0 AT3G06350 315 / 9e-100 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10004130 [exp] 651 / 0 AT3G06350 398 / 3e-132 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10033981 [exp] 505 / 1e-175 AT3G06350 752 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10012797 [exp] 498 / 7e-173 AT3G06350 748 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10040908 [exp] 333 / 2e-109 AT3G06350 291 / 2e-92 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10005928 [exp] 204 / 3e-61 AT3G06350 180 / 9e-52 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01487 [poplar] [flax] DHquinase_I Type I 3-dehydroquinase CL0603 [poplar] [flax] AA_dh_N PF08501 [poplar] [flax] Shikimate_dh_N Shikimate dehydrogenase substrate binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G029900.2 pacid=42811903 polypeptide=Potri.013G029900.2.p locus=Potri.013G029900 ID=Potri.013G029900.2.v4.1 annot-version=v4.1 ATGGGGCGTGCTGGGATCTTAGCAAATTCCACAATGGTTTGTGCTCCATTGATGTCTCGATCTGTTGAGCAAATGGTGATTGACATGCAGAGTGCAGAGG CACAGGGTGCTGATGCTGTGGAGGTCAGGCTGGACTACATCAACAGCTTCCAGCCTAGCCAAGACCTGGAAACTATCATCAGAAACAAGCCATTGCCCGT CATCATTGTGTACAGGCCGAGGTGGGAAGGTGGTCAGTATGAAGGGGATGAGCACACAAGGCTTGAAGCACTTCGTTTAGCACATGAACTGGGAGCTGAT TATATTGATGTTGAGCTCAAGGTTGCATCTGATCTGGTACGGGAAGTGAAAAACAAGCATCAGACTGGTGGCAAAGTCATTGTATCATCTTATTTGAGTG GCGCAACCCCTTCAAAAGAAGATCTCAGCCATCTTGTTGCGAGCATGCAAGCTACCAAAGCAGATATCATTAAAGTTGTTTCTAATGCAAATGATATCAC AGAATTGGATAGGATTTTTCATTTGCTTTCACATAGTGAGGTGCCAGCGGTTGCATACTCATTAGGGGAAAGAGGCCTCATAAGCCAGTTATTGTGTCCC AAATTCGGTGGTGCTTTAGTCTATGGAGCCATGGAAGGAAATTCAATTCCTGGTTTGCCTACTTTAGACAGCCTTAGAGAAGCCTACAAGGTTGAGAACA TCAATTCAGATACTAAAGTTTTCGGTCTTGTTTCAAAACCAGTTAGCCACAGCAAAGGCCCTATACTGCACAATCCTGCCTTCAGGCATGCGAACTTTAA TGGGATTTATGTGCCAATGTTTGTTGATGATCTCAAGGAGTTCTTTGAAGTCTACGCAAGCCCTGACTTTGCTGGTTATAGTGTTGGGTTTCCATACAAA GAAGCTGTCGTGCAGTTCTGTGACGAAGTCCATCCACTGGCTAAGTCTATAGGTGCTGTTAATACCATCATAAGGAAGCCTAGTGATGGGAAGCTGATAG GTTATAACACAGACTGTGAGGGTTCAATAGCTTCAATTGAGGATGCTTTGAAAGATCAAAGATACATCAATGGCGCATCTTTAAATTCTCCATTGGCTGG GAAACAGTTTGTGGTTGTTGGTGCTGGAGGCGCAGGAAGAGCAATTGCAGTTGGTGCTAAAAGTAGAGGAGCCCGTGTGATTATTTTCGACATTGATCTT GACAGGGCAAAGTCTCTTGCTCAGGTTGTTTCTGGTGAAGCTCAACATTTTGATAGTCTAGCACATTTCCAGCCTGAGAAGGGAGCAATCCTTGCCAATG CAACACCAATAGGAATGCATCCAAGTACAGACCGAATCCCGGTGGCCGAGGCAACCTTGGGGAACTACCAGCTGGTATTCGATGCTGTTTATACACCAAG AAAAACCAGACTATTAGAAGATGCTGATGCTGCTGGAGCCATTACAGTGAGCGGAGTTGAGATGTTCCTCAAACAGGCCATTGGACAGTTCAGCCTCTTC ACCGGCAGAGAAGCGCCGAAAGACTTCATGCGGGAGATTGTTCTAGCCAAATTCTGA
AA sequence Show only first row Show all	>Potri.013G029900.2 pacid=42811903 polypeptide=Potri.013G029900.2.p locus=Potri.013G029900 ID=Potri.013G029900.2.v4.1 annot-version=v4.1 MGRAGILANSTMVCAPLMSRSVEQMVIDMQSAEAQGADAVEVRLDYINSFQPSQDLETIIRNKPLPVIIVYRPRWEGGQYEGDEHTRLEALRLAHELGAD YIDVELKVASDLVREVKNKHQTGGKVIVSSYLSGATPSKEDLSHLVASMQATKADIIKVVSNANDITELDRIFHLLSHSEVPAVAYSLGERGLISQLLCP KFGGALVYGAMEGNSIPGLPTLDSLREAYKVENINSDTKVFGLVSKPVSHSKGPILHNPAFRHANFNGIYVPMFVDDLKEFFEVYASPDFAGYSVGFPYK EAVVQFCDEVHPLAKSIGAVNTIIRKPSDGKLIGYNTDCEGSIASIEDALKDQRYINGASLNSPLAGKQFVVVGAGGAGRAIAVGAKSRGARVIIFDIDL DRAKSLAQVVSGEAQHFDSLAHFQPEKGAILANATPIGMHPSTDRIPVAEATLGNYQLVFDAVYTPRKTRLLEDADAAGAITVSGVEMFLKQAIGQFSLF TGREAPKDFMREIVLAKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029900 [exp]	0	1	DHQD3
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Potri.018G031600 [exp]	1.00	0.9652
					Potri.010G076350 [exp]	3.74	0.9515
AT3G21690			MATE efflux family protein (.1...		Potri.004G016400 [exp]	3.87	0.9430
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.010G246800 [exp]	4.69	0.9308
					Potri.010G132101 [exp]	7.07	0.9312
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120160 [exp]	7.21	0.9302
AT3G50180			Plant protein of unknown funct...		Potri.006G042873 [exp]	10.58	0.9436
					Potri.014G030600 [exp]	10.58	0.9215
AT5G51970			GroES-like zinc-binding alcoho...		Potri.012G135000 [exp]	13.49	0.9063
AT3G18430			Calcium-binding EF-hand family...		Potri.003G030300 [exp]	14.59	0.8808

Compare expression of checked genes

Potri.013G029900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.