Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05700 207 / 3e-58 Leucine-rich repeat transmembrane protein kinase protein (.1) AT4G29990 202 / 3e-56 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G19210 194 / 2e-53 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51790 189 / 8e-52 Leucine-rich repeat protein kinase family protein (.1) AT3G46280 172 / 6e-48 protein kinase-related (.1) AT2G37050 177 / 7e-48 Leucine-rich repeat protein kinase family protein (.1.2.3) AT2G29000 177 / 9e-48 Leucine-rich repeat protein kinase family protein (.1) AT3G46270 170 / 7e-47 receptor protein kinase-related (.1) AT2G28990 174 / 2e-46 Leucine-rich repeat protein kinase family protein (.1) AT1G51820 174 / 2e-46 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043700 [exp] 599 / 0 AT3G46280 216 / 3e-63 protein kinase-related (.1) Potri.013G030800 [exp] 586 / 0 AT2G19210 224 / 2e-63 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.013G030866 [exp] 389 / 8e-133 AT3G46280 183 / 2e-53 protein kinase-related (.1) Potri.016G084900 [exp] 159 / 2e-41 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 154 / 8e-40 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.008G150200 [exp] 149 / 6e-39 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.008G181200 [exp] 147 / 1e-37 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G090800 [exp] 137 / 6e-35 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G052800 [exp] 139 / 8e-35 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025849 [exp] 171 / 1e-45 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10015057 [exp] 169 / 9e-45 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 159 / 2e-41 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 150 / 2e-38 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10002456 [exp] 135 / 3e-34 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10036935 [exp] 135 / 3e-33 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 134 / 1e-32 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002405 [exp] 115 / 4e-27 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10038251 [exp] 115 / 5e-27 AT4G29990 560 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10027903 [exp] 113 / 2e-26 AT3G19230 587 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain
Representative CDS sequence Show only first row Show all	>Potri.013G030100.1 pacid=42811741 polypeptide=Potri.013G030100.1.p locus=Potri.013G030100 ID=Potri.013G030100.1.v4.1 annot-version=v4.1 ATGACTAGTTGCCATGTATTACTCTTCCTAGCTCTCTTTGTTTTTTCAGCAAATGCAGATGTTAGCATTGATTGTGGAGCATCCGAGTCTTACACTGACG AAAATTCGATAACTTGGAGGGGAGATGATGACATCTTCCAAAGCAGCTTCTCTGAAGTGGTGCAATCTAGCAACACAGTATCACATGTAATGAGCACTCT TAGGGTGTTCACCTCTCGGAAAAAGAATTGTTACTTTATCAGCGTCGACAAGGGTCCACTTCTTGTTCGTGCCAGCTTCTACTATGGAAATTACGACAGA AAACTATCCCCTCCATCTTTTGATCTGCTTATTGATGGCAACCACTGGACCAAAGTCATTACCTCACTTGATAAACTTCTATATTATGAGGTAGTCTATG TTGTCGAAAGTGACGCGACTACCATCTGCCTTGCCCAAACACAACCTAACCAGTTTCCATTTATATCCGCACTTGAGGTTAGGAGCTTGGATCCTAAAAT GTATAGCTATGTTGATCCGAAATATGCACTGTTTGTAAGGTCCAGGTTTGCTTATGGTGCAAGTGCAACTGTAAGGTATCCGGATGATGTTTATGATCGC ATTTGGGTTCCAGAAAGCGGTGATAAAAAAACTGCAATCTACATGAACTTGTATTTCTCAGAAGTCACCGATCTCGATACCACCCAGAAGAGATCGTTTA GGATTTACATCGATAACAATCCTAAATCAGAGCCGATTATCCCACCTTATGGAAAAGTGACAGAAATGTTAATTAACTATACAGCTTCTTCAAACACCTC GTTTTCGTTGGTTTCCACCCTCGATTCTACACTTCCTCCACTTATCAATGCCATGGAAGTCTTTTCTGTTAGCGATCCTCTAGTAGTTGGAACCAACAGC AAAGATGTGGGAGGTTTAGTGGAGCTCCAAACGCAATTTAGTGTATTACAAGGATGGTATGGTGATCCATGTCTCCCTTCTCCATATACATGGGACTGGA TTAGCTGTAGCAATGACGTTATACCTCACGTAACAGCATTGGACCTTAGTAGCTTTGGTCTTTCAGGGCAACTTCCGGATTTTAGTTCCATGGATTCCCT TGTGACAATCGATTTACACAATAATAGTTTTAGCGGACCTATTCCAGATTTCCTTGGAGCCTTTCCTTACCTCGAAGAACTGAATTTGGCTGATAATTCC TTCAGTGGACCAATACCTCCATCAATATCAAGTAATAAGACGTTGAAATTAGTGGTATCAGGAAATCCAGGCTTGTGTGTCTCCGGCAAGTCCTGTAAGC CAACAAGCACAGATGGCACTAAGAGTTCACCAACTCCCTCAAGCAGCAGCAAAAAGAGTAGCAAGCTTCCATTAATACTTGGAACCACAATTCCAAGCTT CATGATTTTCTGGGCTATAGTGGCATTTATATTGCACTACAGGAGAAAAAAAGCAGCCATAGCTGCAATCACCGCAGGAAAAGCTGCTGGCTCGAATATG CCTTCTCAGGGTCAGGGATCACCCGGCAATGTGATGATGGGTAAAATGGGTGAAGCTGCCGCGAATGAGGGTAATTAA
AA sequence Show only first row Show all	>Potri.013G030100.1 pacid=42811741 polypeptide=Potri.013G030100.1.p locus=Potri.013G030100 ID=Potri.013G030100.1.v4.1 annot-version=v4.1 MTSCHVLLFLALFVFSANADVSIDCGASESYTDENSITWRGDDDIFQSSFSEVVQSSNTVSHVMSTLRVFTSRKKNCYFISVDKGPLLVRASFYYGNYDR KLSPPSFDLLIDGNHWTKVITSLDKLLYYEVVYVVESDATTICLAQTQPNQFPFISALEVRSLDPKMYSYVDPKYALFVRSRFAYGASATVRYPDDVYDR IWVPESGDKKTAIYMNLYFSEVTDLDTTQKRSFRIYIDNNPKSEPIIPPYGKVTEMLINYTASSNTSFSLVSTLDSTLPPLINAMEVFSVSDPLVVGTNS KDVGGLVELQTQFSVLQGWYGDPCLPSPYTWDWISCSNDVIPHVTALDLSSFGLSGQLPDFSSMDSLVTIDLHNNSFSGPIPDFLGAFPYLEELNLADNS FSGPIPPSISSNKTLKLVVSGNPGLCVSGKSCKPTSTDGTKSSPTPSSSSKKSSKLPLILGTTIPSFMIFWAIVAFILHYRRKKAAIAAITAGKAAGSNM PSQGQGSPGNVMMGKMGEAAANEGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05700			Leucine-rich repeat transmembr...		Potri.013G030100 [exp]	0	1
AT1G34580			Major facilitator superfamily ...		Potri.002G096000 [exp]	6.70	0.7560	HT1.2
AT2G33720			AP2/B3-like transcriptional fa...		Potri.003G191700 [exp]	13.45	0.8038
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.016G042250 [exp]	14.24	0.7252
					Potri.004G018900 [exp]	20.56	0.6878
AT1G78400			Pectin lyase-like superfamily ...		Potri.009G038100 [exp]	20.78	0.7491
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.001G025800 [exp]	27.65	0.6427
					Potri.007G057701 [exp]	28.19	0.5589
					Potri.010G120401 [exp]	30.78	0.6611
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Potri.014G106700 [exp]	52.74	0.6087
AT4G37280			MRG family protein (.1)		Potri.002G122500 [exp]	53.74	0.6087

Compare expression of checked genes

Potri.013G030100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.