Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19210 223 / 4e-63 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51790 221 / 2e-62 Leucine-rich repeat protein kinase family protein (.1) AT4G29990 218 / 2e-61 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G37050 215 / 5e-61 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G05700 216 / 9e-61 Leucine-rich repeat transmembrane protein kinase protein (.1) AT3G46280 207 / 3e-60 protein kinase-related (.1) AT3G19230 204 / 1e-58 Leucine-rich repeat (LRR) family protein (.1) AT2G29000 210 / 2e-58 Leucine-rich repeat protein kinase family protein (.1) AT3G05990 199 / 1e-56 Leucine-rich repeat (LRR) family protein (.1) AT2G19190 202 / 7e-56 FRK1 FLG22-induced receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043700 [exp] 813 / 0 AT3G46280 216 / 3e-63 protein kinase-related (.1) Potri.013G030866 [exp] 697 / 0 AT3G46280 183 / 2e-53 protein kinase-related (.1) Potri.013G030100 [exp] 650 / 0 AT1G05700 207 / 3e-58 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.006G132100 [exp] 203 / 8e-56 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.008G150200 [exp] 193 / 1e-54 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G090800 [exp] 192 / 3e-54 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.016G084900 [exp] 194 / 1e-52 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.009G102300 [exp] 187 / 2e-52 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.008G181200 [exp] 182 / 9e-49 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025849 [exp] 206 / 5e-57 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10015057 [exp] 197 / 9e-54 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 186 / 9e-50 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 184 / 2e-49 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10037051 [exp] 179 / 2e-47 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036935 [exp] 174 / 5e-46 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002456 [exp] 166 / 1e-44 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10027903 [exp] 166 / 1e-44 AT3G19230 587 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002405 [exp] 165 / 2e-44 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10019237 [exp] 117 / 3e-27 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain
Representative CDS sequence Show only first row Show all	>Potri.013G030800.1 pacid=42812245 polypeptide=Potri.013G030800.1.p locus=Potri.013G030800 ID=Potri.013G030800.1.v4.1 annot-version=v4.1 ATGGCTAGCTGCCTTGTGTTCCTCCTCTTAGCCTTCTTTGCTTTTTCAGCAAATGCAGATGTTTTCTTTGATTGTGGAGCATCCGATACTTACACGGACG GAAATTCGATAGAATGGATGGGAGATGGCGACATGTTCCAGGACAGCCAGGCTGAAGTGGTGCAGTCTAGCAAGACAATGTCACCTGTAATGAGCACTCT TACGGTGTTCACAACTCGGAAAAAGAATTGTTACTCTTTCTCTGAGAACAAGGGCAATCCACTTCTTGTTCGTGCCAGCTTCTTCTATGGAAACTATGAC AAAAAATCATCTCCTCCATCTTTCGATATGCATATTGATGGAAACGACTGGGTCACGGTCAAGACCTCACTTGATCAGCTTGTAAATTATGAAGTAGTCT ATGTTTCCAAAGGCGATACAACCAGCATCTGTCTTGCCCAAACACAGCCTAACCAGTTTCCATTTATATCAGCACTTGAGGTTAGGAACTTGGATTCAAA AATGTATAACTATCTTGATCCGAACTATGCACTGTTTTTAAGGTCAAGGGTTGCTTATGGTGCTAAGGAAACAGTAAGGCTCCCGGATGATGCTTATGAT CGCATTTGGGTTCCAGCAACAGTTGATAGCGGGATAACTTCGGTCGCAAGCGATGCAATAACCATTGATGTTGTTAATGCACCGGATAATCCTCCACAAG CAGTCTTGCAGAATGCTATTACAATCTCAAGCACGTCAGATTCTATCAGTATAAATCCTGGTTTTCCAGATCAAGAAGTTTCAATATACATGAACTTGTA TTTCTCTGAAGTGACCCAGCTCGATACCACCCAAAACAGGTCCTTTAAGGCTTACATCGATAAAAAGCCCGTATCAGATCCCATTATCCCACCTTATGGA GAAGTGACAGAAACGTTTATTAACTTCACAGCTTCTTCAAACACCTCGTTTTCGTTGGCTGCCAACCCTGATTCTACACTTCCTCCACTTGTCAATGCCA TGGAAGTCTTTTATATTAGCGACCGCCTAACAGATGGAACCAATAGCAAAGATGTGGAAGGCTTAAGTGAACTCCAAAAAGTATTCAGTGATGCATTACA TGAATGGTCTGGTGATCCATGTCTTCCTTCTCCATACACATGGGAATGGATTAGTTGTAGCAATGATACCATACCTCGCATAACGGCATTGGACCTTAGC AACTTTGATCTTTCAGGGGAACTTCCGGATTTTAGCTCCATGGATGCCCTTGTGACAATCAATTTGCAGAATAGCAGCATAAACGGACTTATTCCAGATT TCCTTGGCTCCTTACCTAACCTCAAAGAACTGAACTTGGCAGATAATTACTTCAGTGGAACAATTCCTCCATCAATATCAACGAATAAGAAGCTGAAATT AGTGGTATCAGGCAATCCAAACTTGTGTGTCTCCGGCCAGTCCTGTCAGCCAACTAGTACTGATGGTACTACCAGTTCATCAATTCCTTCAGGTCGCAGA AAAAAGAGTAACAAGCTTCCAGTGATACTTGGAACCACAATTCCAATCTTCGTAATTTTCTGGGCTATTGTGGGATTTATTGTGCACCACAAGAGAAAAA CAGCAGCCATAATCGCAATCACCACAGGACAAACTGGCGGTGCCAAAAGGCGTAGTGGTGCCAACAACATGAGATTTGAAGCGGTGATTAATGAGATCAA TGTTAACATCCAAGACCAAACAACGACAGAGAATGACAATCAATCCGATCCACAGAAATGA
AA sequence Show only first row Show all	>Potri.013G030800.1 pacid=42812245 polypeptide=Potri.013G030800.1.p locus=Potri.013G030800 ID=Potri.013G030800.1.v4.1 annot-version=v4.1 MASCLVFLLLAFFAFSANADVFFDCGASDTYTDGNSIEWMGDGDMFQDSQAEVVQSSKTMSPVMSTLTVFTTRKKNCYSFSENKGNPLLVRASFFYGNYD KKSSPPSFDMHIDGNDWVTVKTSLDQLVNYEVVYVSKGDTTSICLAQTQPNQFPFISALEVRNLDSKMYNYLDPNYALFLRSRVAYGAKETVRLPDDAYD RIWVPATVDSGITSVASDAITIDVVNAPDNPPQAVLQNAITISSTSDSISINPGFPDQEVSIYMNLYFSEVTQLDTTQNRSFKAYIDKKPVSDPIIPPYG EVTETFINFTASSNTSFSLAANPDSTLPPLVNAMEVFYISDRLTDGTNSKDVEGLSELQKVFSDALHEWSGDPCLPSPYTWEWISCSNDTIPRITALDLS NFDLSGELPDFSSMDALVTINLQNSSINGLIPDFLGSLPNLKELNLADNYFSGTIPPSISTNKKLKLVVSGNPNLCVSGQSCQPTSTDGTTSSSIPSGRR KKSNKLPVILGTTIPIFVIFWAIVGFIVHHKRKTAAIIAITTGQTGGAKRRSGANNMRFEAVINEINVNIQDQTTTENDNQSDPQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19210			Leucine-rich repeat transmembr...		Potri.013G030800 [exp]	0	1
AT3G46280			protein kinase-related (.1)		Potri.013G030866 [exp]	1.00	0.9954
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.016G050200 [exp]	2.23	0.9639	CYP712.2
AT3G01190			Peroxidase superfamily protein...		Potri.004G023200 [exp]	2.44	0.9806
AT1G02360			Chitinase family protein (.1)		Potri.002G186500 [exp]	4.00	0.9795
AT3G18230			Octicosapeptide/Phox/Bem1p fam...		Potri.012G053500 [exp]	5.09	0.9521
					Potri.007G082600 [exp]	6.92	0.9487
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.006G058100 [exp]	8.24	0.9482	Pt-CYP712.3
AT3G22060			Receptor-like protein kinase-r...		Potri.011G030800 [exp]	8.83	0.9621
AT1G27040			Major facilitator superfamily ...		Potri.014G036200 [exp]	9.16	0.9517
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.007G090100 [exp]	9.94	0.9523

Compare expression of checked genes

Potri.013G030800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.