Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46280 182 / 3e-53 protein kinase-related (.1) AT1G24485 169 / 4e-48 unknown protein AT3G46270 165 / 1e-46 receptor protein kinase-related (.1) AT3G46260 161 / 1e-45 protein kinase-related (.1) AT1G05700 166 / 2e-45 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51790 159 / 5e-43 Leucine-rich repeat protein kinase family protein (.1) AT4G29450 150 / 8e-40 Leucine-rich repeat protein kinase family protein (.1) AT3G19230 147 / 8e-40 Leucine-rich repeat (LRR) family protein (.1) AT2G29000 149 / 1e-39 Leucine-rich repeat protein kinase family protein (.1) AT1G51860 145 / 2e-38 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G030800 [exp] 698 / 0 AT2G19210 224 / 2e-63 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.005G043700 [exp] 520 / 0 AT3G46280 216 / 3e-63 protein kinase-related (.1) Potri.013G030100 [exp] 423 / 4e-146 AT1G05700 207 / 3e-58 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.008G150200 [exp] 132 / 3e-34 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G132100 [exp] 133 / 5e-34 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.009G102300 [exp] 130 / 1e-33 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G090800 [exp] 129 / 2e-33 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.016G084900 [exp] 124 / 5e-31 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094300 [exp] 124 / 6e-31 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025849 [exp] 145 / 5e-38 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10015057 [exp] 119 / 2e-29 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10027903 [exp] 115 / 4e-28 AT3G19230 587 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002405 [exp] 114 / 8e-28 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10019907 [exp] 112 / 6e-27 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10037051 [exp] 112 / 1e-26 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002456 [exp] 110 / 2e-26 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10023166 [exp] 106 / 8e-25 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 105 / 1e-24 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023463 [exp] 88 / 7e-19 AT1G05700 108 / 8e-25 Leucine-rich repeat transmembrane protein kinase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain
Representative CDS sequence Show only first row Show all	>Potri.013G030866.1 pacid=42811667 polypeptide=Potri.013G030866.1.p locus=Potri.013G030866 ID=Potri.013G030866.1.v4.1 annot-version=v4.1 ATGGGAGATGGCGACATGTTCCAGGACAGCCAGGCTGAAGTGGTGCAGTCTAGCAAGACAATGTCACCTGTAATGAGCACTCTTACGGTGTTCACAACTC GGAAAAAGAATTGTTACTCTTTCTCTGAGAACAAGGGCAATCCACTTCTTGTTCGTGCCAGCTTCTTCTATGGAAACTATGACAAAAAATCATCTCCTCC ATCTTTCGATATGCATATTGATGGAAACGACTGGGTCACGGTCAAGACCTCACTTGATCAGCTTGTAAATTATGAAGTAGTCTATGTTTCCAAAGGCGAT ACAACCAGCATCTGTCTTGCCCAAACACAGCCTAACCAGTTTCCATTTATATCAGCACTTGAGGTTAGGAACTTGGATTCAAAAATGTATAACTATCTTG ATCCGAACTATGCACTGTTTTTAAGGTCAAGGGTTGCTTATGGTGCTAAGGAAACAGTAAATGATGCTTATGATCGCATTTGGGTTCCAGCAACAGTTGA TAGCGGGATAACTTCGGTCGCAAGCGATGCAATAACCATTGATGTTGTTAATGCACCGGATAATCCTCCACAAGCAGTCTTGCAGAATGCTATTACAATC TCAAGCACGTCAGATTCTATCAGTATAAATCCTGGTTTTCCAGATCAAGAAGTTTCAATATACATGAACTTGTATTTCTCTGAAGTGACCCAGCTCGATA CCACCCAAAACAGGTCCTTTAAGGCTTACATCGATAAAAAGCCCGTATCAGATCCCATTATCCCACCTTATGGAGAAGTGACAGAAACGTTTATTAACTT CACAGCTTCTTCAAACACCTCGTTTTCGTTGGCTGCCAACCCTGATTCTACACTTCCTCCACTTGTCAATGCCATGGAAGTCTTTTATATTAGCGACCGC CTAACAGATGGAACCAATAGCAAAGATGTGGAAGGCTTAAGTGAACTCCAAAAAGTATTCAGTGATGCATTACATGAATGGTCTGGTGATCCATGTCTTC CTTCTCCATACACATGGGAATGGATTAGTTGTAGCAATGATACCATACCTCGCATAACGGCATTGTAA
AA sequence Show only first row Show all	>Potri.013G030866.1 pacid=42811667 polypeptide=Potri.013G030866.1.p locus=Potri.013G030866 ID=Potri.013G030866.1.v4.1 annot-version=v4.1 MGDGDMFQDSQAEVVQSSKTMSPVMSTLTVFTTRKKNCYSFSENKGNPLLVRASFFYGNYDKKSSPPSFDMHIDGNDWVTVKTSLDQLVNYEVVYVSKGD TTSICLAQTQPNQFPFISALEVRNLDSKMYNYLDPNYALFLRSRVAYGAKETVNDAYDRIWVPATVDSGITSVASDAITIDVVNAPDNPPQAVLQNAITI SSTSDSISINPGFPDQEVSIYMNLYFSEVTQLDTTQNRSFKAYIDKKPVSDPIIPPYGEVTETFINFTASSNTSFSLAANPDSTLPPLVNAMEVFYISDR LTDGTNSKDVEGLSELQKVFSDALHEWSGDPCLPSPYTWEWISCSNDTIPRITAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46280			protein kinase-related (.1)		Potri.013G030866 [exp]	0	1
AT2G19210			Leucine-rich repeat transmembr...		Potri.013G030800 [exp]	1.00	0.9954
AT1G27040			Major facilitator superfamily ...		Potri.014G036200 [exp]	2.82	0.9631
					Potri.007G082600 [exp]	3.46	0.9555
AT1G02360			Chitinase family protein (.1)		Potri.002G186500 [exp]	4.24	0.9736
AT3G22060			Receptor-like protein kinase-r...		Potri.011G030800 [exp]	4.47	0.9714
AT3G01190			Peroxidase superfamily protein...		Potri.004G023200 [exp]	5.00	0.9711
AT3G05390			unknown protein		Potri.004G083800 [exp]	5.19	0.9600
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447500 [exp]	6.48	0.9634
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Potri.006G089600 [exp]	7.74	0.9672	RBE.2
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Potri.008G049200 [exp]	8.77	0.9574

Compare expression of checked genes

Potri.013G030866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.