Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05000 312 / 1e-110 Transport protein particle (TRAPP) component (.1) AT5G58030 45 / 5e-06 Transport protein particle (TRAPP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044300 [exp] 317 / 8e-113 AT3G05000 286 / 3e-100 Transport protein particle (TRAPP) component (.1) Potri.018G110000 [exp] 45 / 4e-06 AT5G58030 342 / 1e-121 Transport protein particle (TRAPP) component (.1) Potri.006G187300 [exp] 45 / 6e-06 AT5G58030 380 / 7e-137 Transport protein particle (TRAPP) component (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018981 [exp] 301 / 2e-106 AT3G05000 285 / 5e-100 Transport protein particle (TRAPP) component (.1) Lus10033832 [exp] 298 / 5e-105 AT3G05000 285 / 1e-99 Transport protein particle (TRAPP) component (.1) Lus10004135 [exp] 296 / 6e-104 AT3G05000 292 / 1e-102 Transport protein particle (TRAPP) component (.1) Lus10001721 [exp] 245 / 1e-82 AT3G05000 241 / 1e-80 Transport protein particle (TRAPP) component (.1) Lus10003634 [exp] 45 / 5e-06 AT5G58030 367 / 3e-131 Transport protein particle (TRAPP) component (.1) Lus10003350 [exp] 44 / 1e-05 AT5G58030 364 / 2e-129 Transport protein particle (TRAPP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0210 [poplar] [flax] HNOX-like PF04051 [poplar] [flax] TRAPP Transport protein particle (TRAPP) component
Representative CDS sequence Show only first row Show all	>Potri.013G031000.1 pacid=42812581 polypeptide=Potri.013G031000.1.p locus=Potri.013G031000 ID=Potri.013G031000.1.v4.1 annot-version=v4.1 ATGGGACGAGAAGTATCAGAGAGTTGCATCGATAGTTTACTAACAGAAATGGTATCATCTTACTGCAATCGATTTTACTCTAACACTCCTGAACTCGCTG CCCGTCGGATCGAAGCTATTGGTTATCAAGTTGGGCATCAGCTCTCTGAACGGTACACAATGGAACGGCCTCGTTTTACTGATCATTTAGAGGCAATTAA GTTCATATGCAAGGACTTCTGGTCTGAGTTGTTCAAGAAACAGATCGACAACTTGAAAACAAATCACAAAGGTACATTTGTGTTGCAAGATAATAAGTTT CGATGGCTCTCGCGAATGTCGGGAGATCCATCGGTTGAGAATGGAACACAAGATCCTGAAAGCAAGGCTGCACAAGCAATGAGCATGTATTTGTATTTTC CTTGTGGGATTATAAGGGGTGCCCTTTCGAATTTGGGGATTCCTTGTGCTGTTTCTGCTGATATATCCAGTCTTCCGGCTTGTTCATTTGTGATCCGTAT AAAGGTTTGA
AA sequence Show only first row Show all	>Potri.013G031000.1 pacid=42812581 polypeptide=Potri.013G031000.1.p locus=Potri.013G031000 ID=Potri.013G031000.1.v4.1 annot-version=v4.1 MGREVSESCIDSLLTEMVSSYCNRFYSNTPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHKGTFVLQDNKF RWLSRMSGDPSVENGTQDPESKAAQAMSMYLYFPCGIIRGALSNLGIPCAVSADISSLPACSFVIRIKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05000			Transport protein particle (TR...		Potri.013G031000 [exp]	0	1
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.014G032900 [exp]	1.00	0.9199
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Potri.010G215500 [exp]	2.23	0.8855
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Potri.010G069600 [exp]	3.16	0.9031
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Potri.001G293100 [exp]	3.16	0.8724
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.002G099800 [exp]	10.24	0.9016	Pt-CHI.3
AT1G47640			unknown protein		Potri.002G130100 [exp]	11.31	0.8582
AT5G59613			unknown protein		Potri.008G053000 [exp]	12.64	0.8741
AT1G10030		ERG28	homolog of yeast ergosterol28 ...		Potri.002G112700 [exp]	12.72	0.8564
AT2G30942			Protein of unknown function (D...		Potri.001G000400 [exp]	13.11	0.8278
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.002G103800 [exp]	14.14	0.8537	VF14.1

Compare expression of checked genes

Potri.013G031000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.