Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25490 114 / 1e-29 Protein kinase family protein (.1) AT3G57750 107 / 9e-28 Protein kinase superfamily protein (.1.2) AT1G21230 105 / 6e-26 WAK5 wall associated kinase 5 (.1) AT1G21210 103 / 3e-25 WAK4 wall associated kinase 4 (.1) AT1G21240 102 / 4e-25 WAK3 wall associated kinase 3 (.1) AT1G21250 100 / 2e-24 PRO25, WAK1 cell wall-associated kinase (.1) AT3G57740 99 / 2e-24 Protein kinase superfamily protein (.1) AT1G21270 98 / 2e-23 WAK2 wall-associated kinase 2 (.1) AT1G16130 97 / 3e-23 WAKL2 wall associated kinase-like 2 (.1) AT1G16260 97 / 3e-23 Wall-associated kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020100 [exp] 129 / 9e-36 AT3G57710 203 / 2e-62 Protein kinase superfamily protein (.1) Potri.003G185700 [exp] 95 / 2e-22 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2) Potri.002G075901 [exp] 95 / 2e-22 AT1G21270 507 / 5e-174 wall-associated kinase 2 (.1) Potri.003G185688 [exp] 94 / 4e-22 AT1G16260 615 / 0.0 Wall-associated kinase family protein (.1.2) Potri.002G076000 [exp] 94 / 4e-22 AT1G21270 631 / 0.0 wall-associated kinase 2 (.1) Potri.018G148498 [exp] 94 / 5e-22 AT1G79680 497 / 5e-168 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.003G185622 [exp] 93 / 8e-22 AT1G16260 551 / 0.0 Wall-associated kinase family protein (.1.2) Potri.004G192500 [exp] 93 / 8e-22 AT1G16260 525 / 2e-177 Wall-associated kinase family protein (.1.2) Potri.004G192300 [exp] 92 / 9e-22 AT1G16130 422 / 4e-142 wall associated kinase-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008105 [exp] 91 / 6e-21 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 89 / 2e-20 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10013384 [exp] 86 / 4e-19 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013387 [exp] 85 / 6e-19 AT1G21240 250 / 5e-76 wall associated kinase 3 (.1) Lus10013385 [exp] 85 / 7e-19 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10036359 [exp] 84 / 1e-18 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10013383 [exp] 84 / 1e-18 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10018835 [exp] 82 / 6e-18 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10034085 [exp] 82 / 9e-18 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10014772 [exp] 81 / 2e-17 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.013G031501.1 pacid=42812586 polypeptide=Potri.013G031501.1.p locus=Potri.013G031501 ID=Potri.013G031501.1.v4.1 annot-version=v4.1 ATGTTTCCATGTTTTAAGGCCATGAAGGATCGTAAACCAGAAGATGAGGCTGTGTTCGAGAGAAACAAAAGAAGATTGATGGAGAAGACAACCCATTTGC TTGGCGGCAGAAGGAGTGGTCCAATCTGCTTCTTATTCTCCAAGGAAGAACTCAAAGAGGCAACAAATAACTACGACTCAAAGCAAGTTTTTCTGGATGA TGGAAACTTTAGATTGTACAAGGGTTTTCTGCAAGGCCAGCAAGTAATTGTCAAAAAGTTCACAGTAAAAAATGGGCTTGAATCTTCTGTTCTTGATATT ATAATTTCCAAACAAATGAATGGCCACAATGCACTCAAGTTGGTAGGAGTTTGCCTGGACACTGAAATTCCTGTACTTGTTTTTGAATCCTTCAAGTCCA GTGGAACTCTTGGTGATCGCATGGGCAATAGAACACCAGGTTTTGAACCTCTTCCCTGGAAACATAGGGTGAATATTGCATTTCATTTAGCTTGCTCGAT TGCGTACTTCCGCCTTCAACTCCCTCGACTCGTTGTTCATGGCGGTCTTAAACCCTCAAGTATCTTGCTAGACGAACACAATGTTCCGGTGCTGACTGAC TTCTCATCATCAAAAATTATATCCCACAAACGATCAGAAGAATATTGA
AA sequence Show only first row Show all	>Potri.013G031501.1 pacid=42812586 polypeptide=Potri.013G031501.1.p locus=Potri.013G031501 ID=Potri.013G031501.1.v4.1 annot-version=v4.1 MFPCFKAMKDRKPEDEAVFERNKRRLMEKTTHLLGGRRSGPICFLFSKEELKEATNNYDSKQVFLDDGNFRLYKGFLQGQQVIVKKFTVKNGLESSVLDI IISKQMNGHNALKLVGVCLDTEIPVLVFESFKSSGTLGDRMGNRTPGFEPLPWKHRVNIAFHLACSIAYFRLQLPRLVVHGGLKPSSILLDEHNVPVLTD FSSSKIISHKRSEEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25490			Protein kinase family protein ...		Potri.013G031501 [exp]	0	1
AT5G06790			unknown protein		Potri.006G191100 [exp]	1.41	0.9846
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.011G074401 [exp]	12.32	0.9718
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.011G116900 [exp]	12.36	0.8552
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.013G136466 [exp]	13.96	0.9717
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.005G154300 [exp]	15.49	0.9716
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.005G154674 [exp]	18.49	0.9708
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.001G300200 [exp]	21.79	0.8904
ATCG00750		ATCG00750.1, RP...	ribosomal protein S11 (.1)		Potri.010G032501 [exp]	22.71	0.9701
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.013G137688 [exp]	25.80	0.9690
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.011G075200 [exp]	28.98	0.9661

Compare expression of checked genes

Potri.013G031501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.