Plant FIBer expression Database

Potri.013G031600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27410 59 / 2e-09 B3 Domain of unknown function (DUF313) (.1)
AT2G32645 57 / 3e-09 Domain of unknown function (DUF313) (.1)
AT3G24850 51 / 9e-07 B3 Domain of unknown function (DUF313) (.1)
AT5G24050 44 / 0.0001 B3 Domain of unknown function (DUF313) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G139000
[exp]
257 / 2e-82 AT2G32645 67 / 6e-13 Domain of unknown function (DUF313) (.1)
Potri.019G076500
[exp]
148 / 1e-40 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1)
Potri.013G065401
[exp]
114 / 6e-30 AT2G24670 51 / 5e-08 Domain of unknown function (DUF313) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000815
[exp]
97 / 8e-22 AT2G27410 68 / 9e-13 Domain of unknown function (DUF313) (.1)
Lus10027272
[exp]
61 / 2e-10 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1)
Lus10027284
[exp]
61 / 9e-10 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1)
Lus10038802
[exp]
57 / 4e-09 AT3G24850 69 / 1e-13 Domain of unknown function (DUF313) (.1)
Lus10038980
[exp]
51 / 1e-06 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1)
Lus10020591
[exp]
46 / 2e-05 AT2G32645 50 / 9e-08 Domain of unknown function (DUF313) (.1)
Lus10030994
[exp]
46 / 3e-05 AT2G27410 60 / 4e-10 Domain of unknown function (DUF313) (.1)
Lus10030996
[exp]
44 / 0.0001 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0405 DNA_b-psBarrel PF03754 DUF313 Domain of unknown function (DUF313)
Representative CDS sequence
>Potri.013G031600.2 pacid=42811544 polypeptide=Potri.013G031600.2.p locus=Potri.013G031600 ID=Potri.013G031600.2.v4.1 annot-version=v4.1
ATGGTGTGTGGGTGTAGCCTAAGTGATGGCCACCATCATGTTGATGGGGATTCCAAGAAAGGGTTTCTTGAGTATAGAGAGAAAGAAACGGGAGTTGAAG
AAAAAGAGTTAACTCCGGTGCAAGAAGAACTCGTGGAGGCTTTGGTGTGGTTCAAGAAGAGAAATTTTACTACAAAAGAGTCTTTGAAGGCTAAGATCAG
CACGGCCAGTTGCAGTGCCCATCAATCTGTGAACCCACCTGGGTGTTTTGTACCCAAGAAAAGGAGAGGATGTGGAGATGGGTTTCTTTCCATGAAAGGC
CCCCAAAGTAATGCTGTTGAAGAAGCCAAAAGTACTGTTACTTCCACTGTTGATGAATTAAGGCTTCCTTCCAAGAAAACCCAAAGTTGTCCTGATCAAG
AAGATGCCATGAGTACTACTAGCAGTGTTGATGAAGTTGTGAACACACTTGGCATTCTCGTACCCATGGAAAAGAGGGGAAATCGAAAGAGCCATGTCAA
GAAAAGCCATTATCATCACTACGTTTGCTCTCATGTAGATGGTCTGAAATTAACGATTGAGAGGCAAGAAGAGAAAAAAACTGCAGCTGGAAAAAAACCA
ATCTTTAAACTCGAAAGGATGGATAATGAGGATGGTCAAGGAGAGAGACCATCTGAGAAAAGAAAGAAGATGGGAAGGGTAGATTTCAAGAAGCTAGGTT
TGGATCCTGCACCCAATTTCTCTTCCCAAATTAAAGACCGGATAGATCATCAAGAAGGCCGTGACAGTGAGATCAAGTTAAGGATCATGAAGCAAGTATT
CAAAACTGATATGAATATGCACCACGACCGTTTCTCAATGCCTGTGAATCAAATAAAGGATATCAAAGATTTTCTGAAGGAAAACGAGATCGAGGGCACA
GAAGTTAAACTTGTGGAAATGGGTCTCGAAGATGATGATGTTCATCAAAGTACAATGAGATTGAGGAAGTGCCACATAAACTCCAATATCTCCTATGTGT
TAGCCTCCAACTGGAGTGATTTTCTGAGAAGAAACGAGGGTGCACTAAAGGAGAATGACATTGTGCAAGTTTATTCCTTTAGGCGTGATGGGAAGCTCTG
GTGTGTCCTCATCAAGATTATGGATGCAGATGATGTTGCCAGGGGTACTGCCGCATCCGAGAGAAGTACTGCTCAAGAGAATAACAATGGGGATCATGGT
ACTGTAGCCGGACAGGCTTTTCACGGGAGTCAAGCCAGTGAGGAAGGAGCCAGAATTAGCCAAGCATAG
AA sequence
>Potri.013G031600.2 pacid=42811544 polypeptide=Potri.013G031600.2.p locus=Potri.013G031600 ID=Potri.013G031600.2.v4.1 annot-version=v4.1
MVCGCSLSDGHHHVDGDSKKGFLEYREKETGVEEKELTPVQEELVEALVWFKKRNFTTKESLKAKISTASCSAHQSVNPPGCFVPKKRRGCGDGFLSMKG
PQSNAVEEAKSTVTSTVDELRLPSKKTQSCPDQEDAMSTTSSVDEVVNTLGILVPMEKRGNRKSHVKKSHYHHYVCSHVDGLKLTIERQEEKKTAAGKKP
IFKLERMDNEDGQGERPSEKRKKMGRVDFKKLGLDPAPNFSSQIKDRIDHQEGRDSEIKLRIMKQVFKTDMNMHHDRFSMPVNQIKDIKDFLKENEIEGT
EVKLVEMGLEDDDVHQSTMRLRKCHINSNISYVLASNWSDFLRRNEGALKENDIVQVYSFRRDGKLWCVLIKIMDADDVARGTAASERSTAQENNNGDHG
TVAGQAFHGSQASEEGARISQA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G27410 B3 Domain of unknown function (DU... Potri.013G031600
[exp]
0 1
AT5G64620 ATC/VIF2, C/VIF... cell wall / vacuolar inhibitor... Potri.010G209800
[exp]
14.49 0.5220
AT4G22140 EBS EARLY BOLTING IN SHORT DAYS, P... Potri.014G157100
[exp]
24.00 0.5385
Potri.012G083900
[exp]
56.44 0.4873
Potri.015G059501
[exp]
79.87 0.4999

Potri.013G031600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.