Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05040 1514 / 0 HST1, HST HASTY 1, HASTY, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018994 [exp] 1709 / 0 AT3G05040 1579 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10033845 [exp] 1695 / 0 AT3G05040 1578 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10001714 [exp] 1574 / 0 AT3G05040 1465 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10004145 [exp] 1567 / 0 AT3G05040 1460 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08389 [poplar] [flax] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Potri.013G032100.1 pacid=42811399 polypeptide=Potri.013G032100.1.p locus=Potri.013G032100 ID=Potri.013G032100.1.v4.1 annot-version=v4.1 ATGGAAGAGAGTAATAGCAATAACCACATAGCAAACAATGTGGCTCGAGCAATTGCTGCTGCTCTTGACTGGAACTCTACTCCTGATGCTCGCAAAGCTG CTGTGTCTTTCCTTGAATCCATCAAAGCAGGAGATGTACGAATTTTGGCCAGCTCATCATTCGTTCTTGTCAAAAAGGACTGGTCTTCTGAAATTCGGTT GCATGCTTTCAAAATGCTGCAGCATTTGGTACGGTTGCGATGGGAGGAATTGAGCCCAACAGAACGCAGGAACTTTGCGAATGCTGCTGTTGAGTTGATG GCTGAAATTGCAAATTCCTGTGAAGAATGGGTGCTGAAAAGTCAGACAGCTGCCCTTGTTGCTGAGATTGTCAGAAGAGAAGGCTTAGAACTGTGGAAAG AACTGCTTCCATCTCTGGTTTCCCTATCTAGTCAGGGCCCCATACAAGCTGAGTTGGTTTCGATGACACTGAGGTGGCTTCCTGAAGATATTACAGTTCA CAATGAAGATTTAGAAGGTGATCGGCGTAGGTTATTGTTGCGAGGGCTTACTCAGTCATTGCCTGAAATGCTGCCACTACTATACACCTTACTTGAGAGA CATTTTGGAGCTGCATTGAGCGAAGCAGGGAGGCAGCAACTGGACATCGCAAAACAGCATGCAGCAACAGTAACAGCGACTTTGAATGCTGTCAACGCTT ATGCTGAGTGGGCGCCTTTGCAGGATCTAGCCAAATATGGCATAATTTATGGCTGTGGTGTCATGCTGTCTTCTCCTGACTTTCGTCTTCATGCCTGTGA ATTTTTCAAACTCGTCTCACAAAGGAAGAGACCTGCCGATGCCTCTGCTTCTGAATTTGATTCTGCAATGCGTAATATCTTTCAGATCATGATGAATGTC TCAAGAGATATTTTGTACAAAACTGTCTCAAGTGCTGGAGTTATGGATGAGAGTGAATTTGAGTTTGCAGAATATATATGCGAGAGTATGGTGTCTTTGG GTTCTTTTAACTTTCAATGCATTTCTGGTGACAACACTATACTCTCTCTTTATTTACAGCAGATGCTGGGCTTTTTTCAACATTTTAAGCTAGCTCTTCA TTATCAATCCCTGCTATTTTGGCTGGTGCTAATGAGAGATTTAATGTCAAAGCCGAAAGTTACTGCATATTCAGCAGACGGGTCTGCTTTTAACAGTGCA GGCTCTAGTTCTGGACAGGTTGATGATGAAAAAAGGAGGACTTTAAGCCTTGTGGATGATGATATTTGTGTTGTAATTCTGGATATCTCTTTCCAGCGCT TGCTTAAGAAAGAAAAGGTTTTCTCTGGGAATTCCTTTTCTCCTGGAACATTGGAGTTGTGGAGTGATGATTTTGAAGGCAAGGGTGACTTTGGCCAATA TCGTTCCAAGCTGACCGAGCTGATGAGACTTGTTGCTTCTTTTAAGCCCCTAATAGCTGGTGCTAAAATCTCTGAAAGAATTCTTTCAATCATTAAGAGC ATTCCAAATTCTCAAATACCTGTTCAGGACTTAGCTGTGATGGAAAGCATGCAAGTGGCTTTAGAAAATGTTGTCAATGCAGTTTTTGATGGATCAAATG GCTATGCGGCGGTCAGTTCGGAAGTTCACCTAGCGTTGTGTAGAGTTTTTGAAGATTTACTTCAGCAACTCCTTTCTTTGAAATGGACGGAGCCAACTCT TGTGGAAATCCTAGGGCACTATTTAGACGCGCTGGGTCCATTTTTGAAGTATTTTCCAGATGCGGTTGGTGGTGTCATTAATAAATTATTCGAGCTTCTA ATGTCAATCCCATTTGTTGTTAAGGATCCTTCAGTAAGCAGTGCACGCCATGCAAGGTTACAGATTTGTACGTCATTTATTCGAATAGCCAAATCTGCTG ACAAAAGTGTTCTACCTCATATGAAAGGAATAGCTGATACCATGGCATATATGCAAAGAGAGGGCTCTCTGCTTCGTGGTGAACATAATCTGCTAGGTGA AGCATTTCTTGTTATGGCTTCAGCTGCCGGGACTCAACAACAGCAAGAAGTTTTGGCCTGGTTGCTTGAACCTTTGAGCCAACAGTGGACACAGCTAGAG TGGCAAAATAATTATTTGTCTGAGCCACTAGGTCTGATCCGTTTGTGCTCTGAGACAGCATTCATGTGGTCAATTTTCCACACTGTGACATTCTTTGAGA AGGCACTTAAGAGGAGTGGAATCAGAAAAGGCAGTCTGAATTTGCAAAGCATCTCAACAGCAAGTACTATACATCCAATGGCTTCTCATCTGTCCTGGAT GCTGCCACCCCTCTTGAAACTTCTTCGTGCTGTGCACTCACTTTGGTCTGCATCCATATCTCAAATGTTACCTGGAGATATCAAAGCTGCCATGACCATG GGCAATGCTGAACGATATAGTCTCCTTGGGGAAGGAAACCCCAAATTGTCCAAAGGTTCCTTAAACTTCATAGATGGATCTCATATTGATACAAGTAGGG AAGGACACACCGAAACAAATGAAGCTGATATACGGAATTGGTTGAAAGGTATCAGAGATAGTGGATACAATGTATTGGGCCTATCGATGACCATTGGTGA TCCATTTTTTAAATGTTTGGATGTTCATTCTGTTGGTGTGGCACTACTGGAAAACATACAGTCAATGGAGTTCAGACATACAAGGCAGCTTGTCCATTCA GCTTTGATACCTTTGGTTAAACATTGTCCTATGGAAATGTGGGAGGTCTGGCTGGAAAAGCTCTTGCATCCATTATTTATCCATGTACAGCAAGCTCTTA CCTTTTCTTGGTCCAGTCTCCTGCATGAGGGTAAAGCAAAGGTCCCAGATGTCCTTGGCATCCTTGCTGAGGCAGACTTGAAAGCAGAAGTAATGGAAGA GAAACTGCTTCGAGACCTAACTCGTGAGATGTGCGTTCTTCTCTCTACAATAGCTTCGCCCGGACTAAATACCGGGCTTCCTACTTTAGAACAATCTGGC CATGCTATCCGTGTGGATGCATCTTCTTTGAAGGAATTGGACGCATTTGCATCAAATTCTATGGTTGGTTTTCTTTTGAAGCACAATGGTTTGGCTGTTC CAGCATTACAGATTTGTTTAGAAGCTTTCACATGGACAGATGGTGAAGCAGTATCAAAAGTTTTGTCCTTTTGTGCTAGTGTGATTCTTCTAGCAATCTC AGCTAATAATGTTCAACTCAGAGAGTTTGTTTCTAAAGATCTGTTCTCTGCAATTATCAAAGGTTTGGCGCTCGAGTCAAATGCATTTATCAGTGCTGAT CTAGTTGGTTTCTGTCGAGAAATATTCATGCATCTCTGTGATAGAGATCCAGCTCCAAGGCAGGTTCTGCTTTCTCTCCCTTGTATTAAACCCCAGGATT TGGTTGCCTTTGAAGAAGCTTTGACCAAGACAGCTAGCCCTAAGGAACAAAAGCAACATATGAAGAGCTTGCTTTTATTAGCTACTGGAAACATGCTAAA AGCGCTAGCTGCTCAGAAGAGTGTAAACATTATCACAAATGTTACAATGAGGCCTCGCAGCTCGGTAAATGCTCCAGAAACCAGAATTGATGAGGGGGAT ACTATAGGATTGGCAGCCATTTTGTGA
AA sequence Show only first row Show all	>Potri.013G032100.1 pacid=42811399 polypeptide=Potri.013G032100.1.p locus=Potri.013G032100 ID=Potri.013G032100.1.v4.1 annot-version=v4.1 MEESNSNNHIANNVARAIAAALDWNSTPDARKAAVSFLESIKAGDVRILASSSFVLVKKDWSSEIRLHAFKMLQHLVRLRWEELSPTERRNFANAAVELM AEIANSCEEWVLKSQTAALVAEIVRREGLELWKELLPSLVSLSSQGPIQAELVSMTLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEMLPLLYTLLER HFGAALSEAGRQQLDIAKQHAATVTATLNAVNAYAEWAPLQDLAKYGIIYGCGVMLSSPDFRLHACEFFKLVSQRKRPADASASEFDSAMRNIFQIMMNV SRDILYKTVSSAGVMDESEFEFAEYICESMVSLGSFNFQCISGDNTILSLYLQQMLGFFQHFKLALHYQSLLFWLVLMRDLMSKPKVTAYSADGSAFNSA GSSSGQVDDEKRRTLSLVDDDICVVILDISFQRLLKKEKVFSGNSFSPGTLELWSDDFEGKGDFGQYRSKLTELMRLVASFKPLIAGAKISERILSIIKS IPNSQIPVQDLAVMESMQVALENVVNAVFDGSNGYAAVSSEVHLALCRVFEDLLQQLLSLKWTEPTLVEILGHYLDALGPFLKYFPDAVGGVINKLFELL MSIPFVVKDPSVSSARHARLQICTSFIRIAKSADKSVLPHMKGIADTMAYMQREGSLLRGEHNLLGEAFLVMASAAGTQQQQEVLAWLLEPLSQQWTQLE WQNNYLSEPLGLIRLCSETAFMWSIFHTVTFFEKALKRSGIRKGSLNLQSISTASTIHPMASHLSWMLPPLLKLLRAVHSLWSASISQMLPGDIKAAMTM GNAERYSLLGEGNPKLSKGSLNFIDGSHIDTSREGHTETNEADIRNWLKGIRDSGYNVLGLSMTIGDPFFKCLDVHSVGVALLENIQSMEFRHTRQLVHS ALIPLVKHCPMEMWEVWLEKLLHPLFIHVQQALTFSWSSLLHEGKAKVPDVLGILAEADLKAEVMEEKLLRDLTREMCVLLSTIASPGLNTGLPTLEQSG HAIRVDASSLKELDAFASNSMVGFLLKHNGLAVPALQICLEAFTWTDGEAVSKVLSFCASVILLAISANNVQLREFVSKDLFSAIIKGLALESNAFISAD LVGFCREIFMHLCDRDPAPRQVLLSLPCIKPQDLVAFEEALTKTASPKEQKQHMKSLLLLATGNMLKALAAQKSVNIITNVTMRPRSSVNAPETRIDEGD TIGLAAIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Potri.013G032100 [exp]	0	1
AT5G47020			unknown protein		Potri.003G086200 [exp]	3.00	0.7841
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	6.48	0.7734
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	15.39	0.7586
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.013G002800 [exp]	17.08	0.7412
AT2G15900			Phox-associated domain;Phox-li...		Potri.004G146600 [exp]	18.16	0.7394
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Potri.017G101100 [exp]	22.64	0.7026
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.012G080200 [exp]	24.39	0.6790
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.001G049400 [exp]	25.57	0.5922
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Potri.001G346000 [exp]	26.38	0.7185
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.014G084500 [exp]	29.83	0.6998

Compare expression of checked genes

Potri.013G032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.