Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54610 788 / 0 Protein kinase superfamily protein (.1.2.3) AT3G05050 705 / 0 Protein kinase superfamily protein (.1) AT5G50860 647 / 0 Protein kinase superfamily protein (.1) AT1G53050 626 / 0 Protein kinase superfamily protein (.1) AT1G09600 564 / 0 Protein kinase superfamily protein (.1) AT1G74330 553 / 0 Protein kinase superfamily protein (.1.2) AT1G71530 543 / 0 Protein kinase superfamily protein (.1.2) AT1G03740 541 / 0 Protein kinase superfamily protein (.1.2) AT1G18670 537 / 0 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT5G44290 531 / 0 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045500 [exp] 1081 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 859 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 702 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 699 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 642 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 636 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 605 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.012G067800 [exp] 568 / 0 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 567 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004144 [exp] 894 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 892 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012805 [exp] 853 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 835 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025773 [exp] 630 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 628 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 568 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10015727 [exp] 559 / 0 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10028890 [exp] 555 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10039836 [exp] 553 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.013G032200.2 pacid=42811781 polypeptide=Potri.013G032200.2.p locus=Potri.013G032200 ID=Potri.013G032200.2.v4.1 annot-version=v4.1 ATGGGGTGTGTTCTTGGGAGAGAGGTATCTTCAGGCATAGTTTCTGAGTCTAAAGGGGTTAAGAAACTACGTGTTGAATCCAATAGGAAAATAGAAGATG TTTCGGTGACAAAGACTGATACTACTAGTAGTGTTGTTGAGATTAAAAATGAGGAAACTCAGGGGGAGAAAGTTGATGGGGATAAAAAACCTAAGGGAGA GAGGAGGTGGTCAAGGCCAAACTCGAAGCCAAGTAACCTGCCTAAACAAACACGTGGCGAGCAGGTTGCTGCTGGATGGCCACCCTGGCTGTCGGCAGTT TGTGGGGAGGCACTAAATGGATGGATTCCACGGAGGGCAGACACTTTTGAGAAGATTGATAAGATTGGATCAGGAACATATAGCAATGTGTACAAAGCTA GAGATCTATTGACGGGCAAAGTTGTTGCCCTTAAAAAGGTTCGTTTTGATAATTTGGAACCAGAGAGTGTGAAGTTCATGGCTAGAGAGATCCTCATTTT GCGAAGATTGGATCATCCTAATGTTGTAAAGTTGGAAGGGTTAGTTACTTCCAGGATGTCATGTAGTTTGTACCTAGTATTTGAGTACATGGTGCACGAT TTAGCTGGACTTGCTGCCAGCCCTGCAGTAAAATTTACTGAGCCACAGGTTAAATGTTACATGCATCAGCTATTATCTGGACTTGAGCATTGTCACAATC GTGGCGTGCTTCATCGTGACATCAAGGGATCGAATCTTTTGATTGACAATGAAGGAATACTCAGGATTGCGGATTTTGGATTGGCGTCTTTCTTTGATCC TAATCACAAGCTTCCAATGACAAGTCGGGTTGTTACTTTGTGGTATCGGCCTCCTGAGCTTCTCCTTGGGGCTACTGACTATGGCGTTGGTATTGACCTG TGGAGTGCAGGCTGTATATTGGCTGAGCTACTGGCTGGGAAGCCCATCATGCCTGGTCGTACTGAGGTAGAGCAACTACATAAGATATACAAGCTATGTG GTTCACCATCAGATGAATACTGGAAAAAATCAAAGTTGCCAAATGCAACCTTGTTTAAGCCTCGAGAGCCTTACAAAAGATGCATAAGAGAGACATTTAA AGATTTTTCACCATCATCACTTCCCCTCATTGAAACTCTTCTTGCAATTGATCCAGCAGAACGTCAGACAGCCACAGCTGCCCTAAAGAGTGAATTCTTC ACAACAGAACCTTATGCTTGCGAACCTTCCAGTCTCCCAAAATATCCTCCAAGTAAGGAGATGGATGCTAAAAGACGAGATGATGAAGCTCGAAGACTAA GAACTGCTAGCAAAGCCCAAGGTGATGCTGCAAAGAAACCACGAACACGTGAACGTCATGCTAGGGGAATGCCTGCATCTGATGCGAATGCAGAGCTCCC GTCCAATATTGATAGAAGGCGTCTGATTAACCATGCAAATGCGAAAAGCAAGAGTGAAAAGTTCCCCCCGCCACATCAGGATGGAGCACTTGGGTATCCT TTAGGATCTTCACACCACATTGATCCTGCGCTCGTTCCTCCTGATGTCCCATTCAGCACCACCTCATTTACTTACTTGAAGGAGTCAATACAAACTTGGT CTGGCCCATTGGTCGATCCTGCTGGTGTTGGTGCTCCGAGGCGAAAGAAGAAGAATGCAGGTGACACACGAGAATTGTCAAAACTGCCAACTGGAAAAAA TAAAAGCAGAGATACTCAGTTAAAAGGAAAGAAGAGCATGGCTTGA
AA sequence Show only first row Show all	>Potri.013G032200.2 pacid=42811781 polypeptide=Potri.013G032200.2.p locus=Potri.013G032200 ID=Potri.013G032200.2.v4.1 annot-version=v4.1 MGCVLGREVSSGIVSESKGVKKLRVESNRKIEDVSVTKTDTTSSVVEIKNEETQGEKVDGDKKPKGERRWSRPNSKPSNLPKQTRGEQVAAGWPPWLSAV CGEALNGWIPRRADTFEKIDKIGSGTYSNVYKARDLLTGKVVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMVHD LAGLAASPAVKFTEPQVKCYMHQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILRIADFGLASFFDPNHKLPMTSRVVTLWYRPPELLLGATDYGVGIDL WSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRETFKDFSPSSLPLIETLLAIDPAERQTATAALKSEFF TTEPYACEPSSLPKYPPSKEMDAKRRDDEARRLRTASKAQGDAAKKPRTRERHARGMPASDANAELPSNIDRRRLINHANAKSKSEKFPPPHQDGALGYP LGSSHHIDPALVPPDVPFSTTSFTYLKESIQTWSGPLVDPAGVGAPRRKKKNAGDTRELSKLPTGKNKSRDTQLKGKKSMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54610			Protein kinase superfamily pro...		Potri.013G032200 [exp]	0	1
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.006G072400 [exp]	1.00	0.7686
AT1G14710			hydroxyproline-rich glycoprote...		Potri.008G138900 [exp]	2.82	0.7550
AT1G47655	DOF		Dof-type zinc finger DNA-bindi...		Potri.014G036600 [exp]	3.46	0.7214
AT1G12380			unknown protein		Potri.012G129100 [exp]	7.41	0.7124
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Potri.003G134000 [exp]	10.95	0.6287
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.012G016900 [exp]	12.32	0.6367
AT5G60760			P-loop containing nucleoside t...		Potri.004G213500 [exp]	18.57	0.6402
AT5G22930			Protein of unknown function (D...		Potri.009G006000 [exp]	19.82	0.7281
AT1G75800			Pathogenesis-related thaumatin...		Potri.005G240900 [exp]	31.17	0.6467
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Potri.014G168100 [exp]	33.57	0.6839

Compare expression of checked genes

Potri.013G032200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.