Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05060 737 / 0 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27120 733 / 0 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27140 496 / 7e-173 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G56110 336 / 3e-109 NOP56 homolog of nucleolar protein NOP56 (.1) AT3G12860 328 / 1e-106 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G60170 97 / 3e-21 EMB1220 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045600 [exp] 879 / 0 AT5G27120 768 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.015G092900 [exp] 332 / 4e-107 AT3G12860 761 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.012G095400 [exp] 330 / 1e-106 AT1G56110 761 / 0.0 homolog of nucleolar protein NOP56 (.1) Potri.014G102800 [exp] 109 / 2e-25 AT1G60170 610 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.002G176000 [exp] 106 / 2e-24 AT1G60170 591 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018995 [exp] 786 / 0 AT5G27120 734 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10033846 [exp] 785 / 0 AT5G27120 758 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10004143 [exp] 765 / 0 AT5G27120 730 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10001716 [exp] 764 / 0 AT5G27120 722 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10021096 [exp] 330 / 2e-106 AT1G56110 782 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10017214 [exp] 330 / 2e-106 AT1G56110 783 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10007265 [exp] 310 / 4e-101 AT3G05060 310 / 1e-101 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10029168 [exp] 107 / 2e-24 AT1G60170 707 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10012997 [exp] 107 / 3e-24 AT1G60170 705 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10040032 [exp] 93 / 3e-20 AT1G56110 231 / 1e-71 homolog of nucleolar protein NOP56 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01798 [poplar] [flax] Nop snoRNA binding domain, fibrillarin
Representative CDS sequence Show only first row Show all	>Potri.013G032300.1 pacid=42811140 polypeptide=Potri.013G032300.1.p locus=Potri.013G032300 ID=Potri.013G032300.1.v4.1 annot-version=v4.1 ATGCTTTTGCTATTTGAGACACCGGCTGGCTTTGCCCTTTTTAAAGTTTTGGATGAAGGAAAGCTATCCAAAGTTGAGGATTTGGGGAAGGAATTTTCTA GCCCAGACTCAGCAAGAAAGGTGGTGAAGTTGAAAGCTTTTTCCAAATTTGAGAACACGTCCGAGGCTTTGGAATCTGTTACCAAAATTATTGAAAGCTC GACCAGCAAAGGTCTGAGGAAATTTTTGCGTGCTAACTGTGATGGTGAGACGTTAGCTGTGGCTGATTCAAAGCTTGGAAATGCAATCAAGGATAAACTG AAAATAGAATGTGTTCACAACAATGCTGTCATGGAATTGATGAGGGGTGTTAGGAGTCAGTTGACAGAACTTATATCCGGTTTAGCTACACAAGATTTGG CACCGATGAGCTTGGGTTTGTCTCACAGTCTTTCTCGATACAAACTGAAGTTCAGTCCTGATAAGGTTGACACAATGATCATTCAAGCCATTGGTTTGCT TGATGATCTTGATAAGGAGCTCAACACATATGCAATGAGAGTTCGGGAATGGTATGGTTGGCATTTTCCTGAGCTTGCTAAAATTGTACAAGACAACATC CTTTATGCCAGATCAGTGAAACTAATGGGTAGCCGTGATAATGCCGCAAAGCTTGATTTCTCTGAGATACTGCCAGAAGAAGTTGAGGCAGAACTGAAGG AGGCGGCTGTGATATCTATGGGAAGTGATGTTAGTGATGTTGATTTGATGAATATCAAAGAACTCTGTGACCAGGTCTTATCTCTATCTGAATATAGAGC TCAGCTGTATGATTATTTAAAAAACAGGATGAATACCATTGCACCGAATTTGACCGCTCTTGTTGGAGAGCTTGTTGGAGCTCGGCTTATTGCCCATGGG GGTAGCTTGTTAAATCTTGCAAAGCAGCCTGGGAGCACAGTTCAGATTCTTGGGGCAGAAAAGGCTCTCTTCAGAGCTCTGAAAACAAAGCATGCAACTC CAAAATATGGGCTTCTTTATCATGCGTCCTTGGTCGGTCAGGCCCCCCCTAAGATGAAGGGTAAAATGTCCAGGTCACTAGCTGCAAAAGCTGCTCTCAC AATCCGATATGATGCTCTTGGAGATGGCCAAGATGACTCTATGGGACTGGAGAACCGGCTAAAGCTTGAAGCACGATTAAGGAACCTCGAAGGTAAAGAA CTGGGTCGTTCTGCTGGATCAGCTAAAGGCAAACCTAAGATAGAAGCTTACGACAAGGATAGGAAGAAGGGAGCTGGAGGACTGATAACTCCTGCCAAGA CATATAATCCTTCTGCAGATGCTATTCTTGGGCAAACACCAAATTCAACTGCTAGAAAGGTAGAAGAAGAGGAACCGGCAAAGGAGGCTCCAGTTACTGG TGAAGAGAAAAAAGAGAAGAAGAAGAAGAAGAGATCTGAAGAAGAAACAGCTGTGCCAAGTGACAGGAATGGAACTGCCGAACAGGATGGGGAAGCCAAG AAAGAAAAGAAGAAAAAGAAGAAACATCAAGCTGAGAGCGATGGTGTTCAAAATGATGCTGAAAATGCTGCTGAGGGAGGCAAGAAGAAAAAGAAGCGAA AACATGCTGAAGCTGAAGAGGATGATGAATATGAAACACCAAGCAAGAAGAAAGAAAAGAAGAAGAAGAAGAAGACCGAGGGTTGA
AA sequence Show only first row Show all	>Potri.013G032300.1 pacid=42811140 polypeptide=Potri.013G032300.1.p locus=Potri.013G032300 ID=Potri.013G032300.1.v4.1 annot-version=v4.1 MLLLFETPAGFALFKVLDEGKLSKVEDLGKEFSSPDSARKVVKLKAFSKFENTSEALESVTKIIESSTSKGLRKFLRANCDGETLAVADSKLGNAIKDKL KIECVHNNAVMELMRGVRSQLTELISGLATQDLAPMSLGLSHSLSRYKLKFSPDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIVQDNI LYARSVKLMGSRDNAAKLDFSEILPEEVEAELKEAAVISMGSDVSDVDLMNIKELCDQVLSLSEYRAQLYDYLKNRMNTIAPNLTALVGELVGARLIAHG GSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLLYHASLVGQAPPKMKGKMSRSLAAKAALTIRYDALGDGQDDSMGLENRLKLEARLRNLEGKE LGRSAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNPSADAILGQTPNSTARKVEEEEPAKEAPVTGEEKKEKKKKKRSEEETAVPSDRNGTAEQDGEAK KEKKKKKKHQAESDGVQNDAENAAEGGKKKKKRKHAEAEEDDEYETPSKKKEKKKKKKTEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05060			NOP56-like pre RNA processing ...		Potri.013G032300 [exp]	0	1
AT3G12860			NOP56-like pre RNA processing ...		Potri.015G092900 [exp]	1.00	0.9488	NOP56.1
AT5G27120			NOP56-like pre RNA processing ...		Potri.005G045600 [exp]	1.41	0.9310
AT3G18600			P-loop containing nucleoside t...		Potri.009G045300 [exp]	2.44	0.9140
AT1G75335			unknown protein		Potri.019G095600 [exp]	3.00	0.9290
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.016G041200 [exp]	3.74	0.9097	Pt-NAP57.1
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.006G044100 [exp]	3.87	0.9159	Pt-NAP57.2
AT4G36680			Tetratricopeptide repeat (TPR)...		Potri.007G028400 [exp]	4.69	0.8665
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.006G148600 [exp]	5.91	0.8085	NFA902
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.012G129200 [exp]	6.70	0.8947
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.007G119800 [exp]	9.16	0.8419

Compare expression of checked genes

Potri.013G032300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.