Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41070 268 / 2e-84 DRB5 dsRNA-binding protein 5 (.1) AT3G26932 265 / 1e-83 DRB3 dsRNA-binding protein 3 (.1.2) AT2G28380 246 / 2e-75 DRB2 dsRNA-binding protein 2 (.1) AT3G62800 123 / 4e-31 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT1G09700 91 / 3e-19 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045700 [exp] 914 / 0 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.017G063700 [exp] 283 / 7e-89 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 278 / 4e-87 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.013G061500 [exp] 118 / 6e-28 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038226 [exp] 109 / 2e-26 AT3G62800 146 / 1e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038184 [exp] 108 / 9e-26 AT3G62800 145 / 5e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.009G152900 [exp] 107 / 9e-25 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.019G037900 [exp] 108 / 2e-24 AT3G62800 151 / 8e-40 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.005G153200 [exp] 91 / 2e-19 AT1G09700 224 / 7e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032007 [exp] 268 / 6e-84 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10035176 [exp] 268 / 7e-84 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10000721 [exp] 233 / 6e-70 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10021471 [exp] 227 / 9e-68 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10041311 [exp] 113 / 1e-27 AT2G28380 191 / 1e-57 dsRNA-binding protein 2 (.1) Lus10003362 [exp] 97 / 7e-23 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10008422 [exp] 102 / 3e-22 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10002619 [exp] 86 / 1e-17 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3) Lus10008862 [exp] 85 / 7e-17 AT1G09700 237 / 1e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10023248 [exp] 84 / 1e-16 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Potri.013G032400.1 pacid=42810869 polypeptide=Potri.013G032400.1.p locus=Potri.013G032400 ID=Potri.013G032400.1.v4.1 annot-version=v4.1 ATGTATAAGAACCAACTGCAAGAGTTGGCTCAAAGAAGCTGCTTCAACCTGCCATCCTATTCGTGTATAAGGGAAGGGCCAGACCATGCCCCTCGATTCA AAGCTACTGTCAACTTCAATGGAGAAACTTTTGAAAGCCCTACTTTTTGCTCCACTCTGAGGCTAGCAGAACATGCTGCAGCTGAGGTAGCTCTCAACAC ACTAGCAAGCCGGGGCCCTTCTAGAGCATTAATTGCTGGAGTTCTGGATGAAACAGGAGTCTACAAGAATTTGCTCCAGGAGACTGCTCACAGAGCTGGG TTAAAGCTTCCAGTGTATACCACGATTCGATCAGGACCTGGCCATGTTCCTGTCTTCTCGTGCACTGTTGAGCTTGCAGGAATGAGCTTCACTGGAGAAC CAGCTAGGACTAAGAAACAAGCTCAGAAGAATGCAGCCATGGCTGCTTGGTCTTCTCTAAAAAGATTGGTTCAACACAGCACATTACCTTCCAATTCATC AACTTCTTCGCCAGTGGAGGCTAAAAGGAGCAGTGAAGAACAAGAACAAGTTGTTATTGCTCGTATTCTTGCATCTTTACAACCAGCTGAGATAAAGAAC TCCAAGCAAAGTGATTCCCAGCGAGGCCAGGAGAGATTCATTCCTGTCTGCAAGGACTTGACCCCTCCAATACCAACTTTATATCCTGTGCAGTGCCAAG GCTGGGCTTACCCTAGCTTTACCCCTGAAATGGCCATATACCAAATGTGGCAGCAAGAAGAATTGTTTCAGTTGCAGAACCGTTTATTGGCATTTCAAGT TCCACCTGTTTCTCCTGGTCCTCAAATTCTTCCATATATGCAGTCCATACTCCATTCAGATTCAGTTCTATTTGGTCCTCTAAGGGAGCAAGAACCTGTA CCTGCAAGTCCCAGAATTACAATTGCCACGTCAAGACCATTTTACTTGGCAGATCATCATGTCTCTGATCCAATCAAGGGAGAGTCCAAGGTGACTATTA GGGAGATACATGAGGAGAAACCAGAAGAACCAGTCCAGTGCTCTACATCAGTTATTCCAGACCCCCCTGTTGTTGGGAATTTCAATGCTGAGCAAAGATT GAAGGACCCGGTTGACATGGATGACAAACAGATGAAGGTTGAACTGGACAGAAAAGATGAAAATGTTCAACCAGGAGATAACCAAACTAGGCAATTCGAG TGGGCTTCCTGCAGTTACAAAGATTCTGGATACAGACCTGCTGACTTCCAAGCACAAAACATGCAGAATTTCCACTCTTCTCGGGTTACTCTACAGTATC CTCAAAGAGCAAGTTCACTCAGGAGTTTTAGACCAGCTCCATCTGCAGCTCCTCCTGTAATGATCAGATCTGTGAGGCCTGTACCTTCATCTACTGTACC TCCTGCACTGAACAGCAATACGGGACCTCCTCCAGTGCCCAAACTGCAAGATTTGGCAGCACAAATTCCTGCTCCACCAAGAATGCGAACTGGAGGTCAT TCATATCCAGCCAGTCCCTTGCCTCAAAGAATGAACCTTGGTGGTGTCCGCCCACGTTTCATGGCACCAGCTGTTCGAATAAGATCGGTTGTGCCAGTCT GTTCGGCTCCTCCAGCAAGGAAAATGCCAACTTCAAGCCAGGGGGCAGTGGTACCTGAGAGAGGGAGCAAAGATACAGCGGCACCAGAAGACATGACAGC AGCAAGTTCAGAGCTCAGTAAGCTTCGGATATGA
AA sequence Show only first row Show all	>Potri.013G032400.1 pacid=42810869 polypeptide=Potri.013G032400.1.p locus=Potri.013G032400 ID=Potri.013G032400.1.v4.1 annot-version=v4.1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRLAEHAAAEVALNTLASRGPSRALIAGVLDETGVYKNLLQETAHRAG LKLPVYTTIRSGPGHVPVFSCTVELAGMSFTGEPARTKKQAQKNAAMAAWSSLKRLVQHSTLPSNSSTSSPVEAKRSSEEQEQVVIARILASLQPAEIKN SKQSDSQRGQERFIPVCKDLTPPIPTLYPVQCQGWAYPSFTPEMAIYQMWQQEELFQLQNRLLAFQVPPVSPGPQILPYMQSILHSDSVLFGPLREQEPV PASPRITIATSRPFYLADHHVSDPIKGESKVTIREIHEEKPEEPVQCSTSVIPDPPVVGNFNAEQRLKDPVDMDDKQMKVELDRKDENVQPGDNQTRQFE WASCSYKDSGYRPADFQAQNMQNFHSSRVTLQYPQRASSLRSFRPAPSAAPPVMIRSVRPVPSSTVPPALNSNTGPPPVPKLQDLAAQIPAPPRMRTGGH SYPASPLPQRMNLGGVRPRFMAPAVRIRSVVPVCSAPPARKMPTSSQGAVVPERGSKDTAAPEDMTAASSELSKLRI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Potri.013G032400 [exp]	0	1
AT5G40200		DEGP9	DegP protease 9 (.1)		Potri.012G077900 [exp]	1.00	0.8836
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.008G119500 [exp]	2.64	0.8586
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	4.89	0.8670
AT5G39410			Saccharopine dehydrogenase (....		Potri.004G126100 [exp]	9.05	0.8682
AT4G31980			unknown protein		Potri.003G209500 [exp]	11.40	0.8601
AT1G15170			MATE efflux family protein (.1...		Potri.010G117000 [exp]	14.14	0.8398
AT1G67325			Ran BP2/NZF zinc finger-like s...		Potri.003G172500 [exp]	14.49	0.8414
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G036600 [exp]	18.24	0.8543
					Potri.004G206625 [exp]	19.79	0.8550
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.001G220600 [exp]	20.78	0.8591

Compare expression of checked genes

Potri.013G032400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.