Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47590 347 / 1e-120 alpha/beta-Hydrolases superfamily protein (.1) AT3G47560 343 / 8e-120 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29840 342 / 3e-119 alpha/beta-Hydrolases superfamily protein (.1) AT5G11910 313 / 1e-107 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G19550 296 / 4e-100 alpha/beta-Hydrolases superfamily protein (.1) AT1G29830 65 / 9e-12 Magnesium transporter CorA-like family protein (.1.2.3) AT4G17150 43 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39400 42 / 0.0003 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068000 [exp] 476 / 1e-171 AT3G47590 360 / 4e-125 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G227900 [exp] 352 / 4e-123 AT5G11910 363 / 5e-127 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012836 [exp] 355 / 9e-124 AT3G47590 359 / 1e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10013517 [exp] 322 / 3e-111 AT5G11910 351 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.013G032500.6 pacid=42811127 polypeptide=Potri.013G032500.6.p locus=Potri.013G032500 ID=Potri.013G032500.6.v4.1 annot-version=v4.1 ATGGCTCTCCCTCCGTCTGCCCAAAACCCAGTTGTTGAGCAGCAGAAAGTTACAATATCAAACAAACATGGTGAAAAACTGATAGGCTTATTACATGACA CTGGATCCAACGACATAGTTATATTATGCCATGGTTTTTGTTCCACAAAGGAAAACGATATCATGGTGAATCTTGCCAAGGCATTAGAAAAGGAAGGAAT CTCTGCCTTCCGTTTCGACTTGGCTGGAAACGGGGAAAGTGAAGGTTCATTTGCATATGGTAATTACAGGAGAGAGGCTGATGATTTACGTGCTGTAATC GAACACTTCCGCGGAGCAAGCCCAAGCAGAGGCATAAGTGCAATTCTTGGGCATAGTAAAGGAGGCGATGTGGTGCTCCTATATGCTTCAAAATATCAGG ATATCAGCACAGTTTTCAATGTTTCTGGCCGTTATGATCTGAAGAGAGGCATTGAAGAACGAACTGGAAAGGGTTTTATGGAAAAGATCAAACAAGATGG ATTCATTGATGTTAAGGATGGAACGGGGAGTGTCATTTATCGTGTGACCAAGGAAAGTCTGATGGATCGCCTGAATACTGATATGCATGAAGCATGTCTT GCGATCAAGAAGGATTGCAGGGTCTTCACCATTCATGGTTCTGCTGATGAAATCATCCCAGTGGAGGATGCGTTAGAGTTTGCCAAGATCATACCAAATC ACAATCTACACATCATAGAAGGAGCAAATCATTGCTACACTTCACATCTAACTGAGTTAGCATCTGTTGTGTCGAACCTCATGAAAGCAACCTTAAAGCA GGGCAAGGATACCCCTTAG
AA sequence Show only first row Show all	>Potri.013G032500.6 pacid=42811127 polypeptide=Potri.013G032500.6.p locus=Potri.013G032500 ID=Potri.013G032500.6.v4.1 annot-version=v4.1 MALPPSAQNPVVEQQKVTISNKHGEKLIGLLHDTGSNDIVILCHGFCSTKENDIMVNLAKALEKEGISAFRFDLAGNGESEGSFAYGNYRREADDLRAVI EHFRGASPSRGISAILGHSKGGDVVLLYASKYQDISTVFNVSGRYDLKRGIEERTGKGFMEKIKQDGFIDVKDGTGSVIYRVTKESLMDRLNTDMHEACL AIKKDCRVFTIHGSADEIIPVEDALEFAKIIPNHNLHIIEGANHCYTSHLTELASVVSNLMKATLKQGKDTP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.013G032500 [exp]	0	1
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.014G035800 [exp]	3.16	0.7445	PDE135.1
AT5G04250			Cysteine proteinases superfami...		Potri.008G036700 [exp]	7.21	0.6944
AT4G34660			SH3 domain-containing protein ...		Potri.003G105200 [exp]	11.31	0.6509
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Potri.008G085400 [exp]	11.83	0.6413
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Potri.002G129300 [exp]	18.33	0.6423	ADR1.1
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Potri.005G243400 [exp]	20.00	0.6429
					Potri.017G094750 [exp]	20.34	0.5877
AT5G26610			D111/G-patch domain-containing...		Potri.013G002100 [exp]	24.53	0.6068
					Potri.003G196200 [exp]	37.78	0.6212
AT1G09730			Cysteine proteinases superfami...		Potri.005G155600 [exp]	39.39	0.6320

Compare expression of checked genes

Potri.013G032500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.