Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54570 850 / 0 Esterase/lipase/thioesterase family protein (.1) AT5G41120 596 / 0 Esterase/lipase/thioesterase family protein (.1) AT5G41130 593 / 0 Esterase/lipase/thioesterase family protein (.1.2) AT3G02030 584 / 0 transferases, transferring acyl groups other than amino-acyl groups;acyltransferases (.1) AT3G26840 582 / 0 Esterase/lipase/thioesterase family protein (.1) AT3G26820 492 / 3e-166 Esterase/lipase/thioesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G033600 [exp] 1373 / 0 AT1G54570 830 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.005G046600 [exp] 1162 / 0 AT1G54570 831 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.005G046700 [exp] 1028 / 0 AT1G54570 868 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033000 [exp] 1009 / 0 AT1G54570 823 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033101 [exp] 904 / 0 AT1G54570 796 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G324200 [exp] 694 / 0 AT5G41120 734 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G324400 [exp] 677 / 0 AT5G41130 745 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Potri.017G062200 [exp] 667 / 0 AT3G26840 644 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G323800 [exp] 662 / 0 AT5G41130 686 / 0.0 Esterase/lipase/thioesterase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018998 [exp] 927 / 0 AT1G54570 824 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10033848 [exp] 867 / 0 AT1G54570 770 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10012560 [exp] 655 / 0 AT5G41120 663 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10041529 [exp] 644 / 0 AT5G41130 647 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Lus10039135 [exp] 46 / 0.0001 AT3G51520 421 / 2e-148 diacylglycerol acyltransferase family (.1) Lus10013796 [exp] 45 / 0.0001 AT3G51520 424 / 2e-149 diacylglycerol acyltransferase family (.1) Lus10039136 [exp] 43 / 0.0007 AT3G51520 349 / 2e-120 diacylglycerol acyltransferase family (.1) Lus10005320 [exp] 43 / 0.001 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF03982 [poplar] [flax] DAGAT Diacylglycerol acyltransferase CL0028 [poplar] [flax] AB_hydrolase PF12146 [poplar] [flax] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Potri.013G033300.3 pacid=42812582 polypeptide=Potri.013G033300.3.p locus=Potri.013G033300 ID=Potri.013G033300.3.v4.1 annot-version=v4.1 ATGACATCAGTTGTTAGTTCTCAGGCAATGTATTGTTTTTTCTCAACTCCAGAGATTACTCCTAGGTTTCGAGTGAGAGTTCAAAGTGGTAGCGGTGGTG GTAACTCAAAAGTATCGCCATCTGATTCCGCTCTAGTGATTGGAGAGAAAGATAAAAAATTCGGGGGTCGAATTGATTCATGGAATGCGAGCTTAAAGTG TGGGATTAAGAAAAAGAGCGTTAAAGATGTTATTTCAAGTGACTTGGATGTCTTGTGGGATGACGGTTATGGGACCAAGACTGCGAAGGATTTTTTTGAA GGAGCCAAGGAGATGATTAGGCCTGACGGGGGGCCTCCCCGGTGGTTTTGCCCTACCGAGTGTGGGCAGCCTTTAAAAGATTCTCCAATTCTTCTGTTTT GCCCTGGGATTGTTGGTGTTGGCTTGGCCCTGACTTTGCATCATAAAGCTCTCGGGAAGGTGTTTGAAGTCAGGTGCCTTCATATTCCAGTGAATGATCG AACACCATTTGAAGGGCTGGTGAAATTTGTCGAAGAAACAGTGAGGCTAGAGCATGCCTCATCTCCAAATAAGCCAATTTATCTAGTGGGGGATTCCTTC GGGGGATGTCTTGTTCTTGCTGTTGCTGCTCGTAATCCTGAAATTGACCTTGTAGTGATACTAGCTAACCCAGCTACATCATTTGACAGGTCACAGCTTC GACCCCTGATCCCCCTTTGGGAGGCGTTGCCTGATGGATTATACAATGCACTTCCATATCTTCTTAGCTTTGTTATGGGTAATCCAGTGGAGATGGCAAG GGTCAATATTGAATATAGACTACCTCCCAGATTACAAATTGAACAATTGTTTCAGAATCTCATTGCTTTGCTACCTCATCTTTCTGATTTGGTTGATATA ATTCCCAAGGACACTCTTATTTGGAAGTTGAAACTGCTCAAATCAGCGGCTTCTTATGCTAATTCCAGGCTTCATGCTGTGAAAGCTGAAGTGCTAGTCC TGTCAAGTGGAAATGATCACATGCTTCCTAGTGGAGATGAAGCTCAGCGTCTGAAAAGAACATTAAAGAATTGCACAGTTCGTTATTTCAAGGACAATGG GCATAATATTTTAATGGAAGGTGGTGTTAATTTGCTTACTGTCATTAAAGGTACTGGAAAATACCGTCGTTCAAGGAGGATTGATTTGGTCTTAGACTTT ATTCCACCAAGCATGTCAGAATTCAAACAAGGATATGATGAAGTAATTGGGTTGTTACGCTTTGCTACTGGTTCTGCCATGTTCTCAACTTTGAATGACG GAAAGATAGTGAAAGGTCTTCATGGGGTTCCAAATGAAGGTCCTGTCTTATTAGTTGGCTACCACATGTTGATGGGACTTGAAGTTTATTCCCTTGTCCC AGAATTCTTGAGAGAGAAAAATATTATGGTTCGTGGTGTAACACATCCAGTTGTATTTAGGGAAAGGCAGGGGGTTTCATCTCCTGAATTTTCTTTAGCT GATTGGATGAAAGTAATGGGTGCAGTACCTGTCACAGCCAGCAATCTTTTCAACTTGCTGTCAGCAAAATCTCATGTGCTTCTTTATCCTGGAGGAGCCC GAGAAGCCCTTCATAACAGGGGTGAAGAATATAAGCTGTTTTGGCCCGATCAACAAGAATTTGTGAGAATGGCAGCAAGGTTTGGGGCTACAATTGTACC ATTTGGAACTGTAGGAGAAGATGATGTAGCAGAATTGGTTCTTGATTACAACGACTTCATGAAAATCCCAGTGATCAATGACTACATCAGAGACGCTAAT CGTAATTCCATAAGACTAAGGGATAAGAGTAAAGGGGAGGTTGCCAACCAAGAACTATATCTCCCAGGTATTCTGCCAAAGGTTCCGGGCCGCTTTTATT TTCTATTCGGAAAGCCTATAGAAACAAAGGACCGAAAGGAAGAGATCCTTGAAGACAGAGAAAATGCAAACCAGTTATACCTGCACATAAAATCTGAAGT TGAACGTTGCATTGCTTATCTTCTGAAGAAACGAGAGGAGGATCCTTACAGGAGTATCGTTGATAGAACAGTGTATCGTGCTTTACATTCTCCTTTGCAT GAAGTTCCAGCATTTGACCCTTAA
AA sequence Show only first row Show all	>Potri.013G033300.3 pacid=42812582 polypeptide=Potri.013G033300.3.p locus=Potri.013G033300 ID=Potri.013G033300.3.v4.1 annot-version=v4.1 MTSVVSSQAMYCFFSTPEITPRFRVRVQSGSGGGNSKVSPSDSALVIGEKDKKFGGRIDSWNASLKCGIKKKSVKDVISSDLDVLWDDGYGTKTAKDFFE GAKEMIRPDGGPPRWFCPTECGQPLKDSPILLFCPGIVGVGLALTLHHKALGKVFEVRCLHIPVNDRTPFEGLVKFVEETVRLEHASSPNKPIYLVGDSF GGCLVLAVAARNPEIDLVVILANPATSFDRSQLRPLIPLWEALPDGLYNALPYLLSFVMGNPVEMARVNIEYRLPPRLQIEQLFQNLIALLPHLSDLVDI IPKDTLIWKLKLLKSAASYANSRLHAVKAEVLVLSSGNDHMLPSGDEAQRLKRTLKNCTVRYFKDNGHNILMEGGVNLLTVIKGTGKYRRSRRIDLVLDF IPPSMSEFKQGYDEVIGLLRFATGSAMFSTLNDGKIVKGLHGVPNEGPVLLVGYHMLMGLEVYSLVPEFLREKNIMVRGVTHPVVFRERQGVSSPEFSLA DWMKVMGAVPVTASNLFNLLSAKSHVLLYPGGAREALHNRGEEYKLFWPDQQEFVRMAARFGATIVPFGTVGEDDVAELVLDYNDFMKIPVINDYIRDAN RNSIRLRDKSKGEVANQELYLPGILPKVPGRFYFLFGKPIETKDRKEEILEDRENANQLYLHIKSEVERCIAYLLKKREEDPYRSIVDRTVYRALHSPLH EVPAFDP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033300 [exp]	0	1
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.009G043800 [exp]	1.41	0.9878
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033600 [exp]	2.00	0.9856
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	3.46	0.9691	Pt-CLPC.2
AT1G52855			unknown protein		Potri.011G124800 [exp]	4.47	0.9584
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Potri.007G044300 [exp]	5.29	0.9593	Pt-ZEAEPOX.1
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	5.47	0.9583
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.014G139500 [exp]	6.48	0.9570	Pt-VAR2.3
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G084400 [exp]	7.07	0.9545
AT1G30860			RING/U-box superfamily protein...		Potri.001G074800 [exp]	7.14	0.9439
AT5G52450			MATE efflux family protein (.1...		Potri.012G051900 [exp]	8.66	0.9364

Compare expression of checked genes

Potri.013G033300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.