Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05090 1147 / 0 LRS1 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G16650 77 / 2e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 76 / 6e-14 PRL1 pleiotropic regulatory locus 1 (.1) AT1G62020 76 / 9e-14 Coatomer, alpha subunit (.1) AT2G21390 76 / 1e-13 Coatomer, alpha subunit (.1) AT3G21540 74 / 4e-13 transducin family protein / WD-40 repeat family protein (.1) AT1G11160 72 / 8e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 72 / 1e-12 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT1G61210 71 / 2e-12 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 69 / 2e-12 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046500 [exp] 1447 / 0 AT3G05090 1142 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G148500 [exp] 82 / 8e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 77 / 5e-15 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G069700 [exp] 77 / 3e-14 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 77 / 4e-14 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.010G012800 [exp] 74 / 2e-13 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.019G096900 [exp] 71 / 5e-13 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 71 / 7e-13 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 70 / 3e-12 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004142 [exp] 1245 / 0 AT3G05090 1091 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001717 [exp] 1235 / 0 AT3G05090 1085 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003487 [exp] 89 / 7e-19 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 88 / 2e-18 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10026094 [exp] 76 / 9e-15 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10006511 [exp] 75 / 9e-14 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 74 / 1e-13 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10025780 [exp] 75 / 2e-13 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10018458 [exp] 74 / 4e-13 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 74 / 4e-13 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF11816 [poplar] [flax] DUF3337 Domain of unknown function (DUF3337)
Representative CDS sequence Show only first row Show all	>Potri.013G033800.3 pacid=42810927 polypeptide=Potri.013G033800.3.p locus=Potri.013G033800 ID=Potri.013G033800.3.v4.1 annot-version=v4.1 ATGCACCGTGTGGGTAGTGCAGGGAACACAAACAATTCTGTTCGCCCGCGTAAAGAGAAGAGGCTGACATATGTGTTGAGTGATGCTGATGACACAAAGC ATTGTGCTGGCATAAACTGTCTAAAAGTGTTAAAGTCCACTGTATCTGATGGGCGTGATTACCTCTTCACTGGGAGTCGTGATGGCACGCTGAAGAGATG GGCCCTTTCTGAAGATTCTGCGACGTGCTCTGCTACATTTGAGTCTCATGTTGATTGGGTAAATGATGCTGTCCTTGCTGGTGACAGAACCCTTGTCTCC TGCTCTTCAGACACCACCCTCAAGGCATGGAATTGCTTATCTGATGGAACTTGTACCAAGACTCTTCGCCAACACTCTGATTATGTTATTTGTCTTGCGG CGGCAGAAAAAAATAGCAATGTAGTTGCCTCTGGAGGCCTTGGTGGGGAAGTTTTCATATGGGATGTGGAAGCTGCACTGACTCCAGTGTCAAAGTCTGG TGATGCAATGGAAGATGATTGTTCAAATGGTGTAAATGGCTCTGCTAATTCATTGCCCGTGACAAGTTTACGAACCATTAGCTCAAGCAACAGCATTTCT GCACACACGTCTCAGTCCCATGGGTATGTCCCAGTTGGTGCTAAAGGCCATAAGGAGTCAGTCTATGCATTGGCAATGAATGATAGTGGAACCCGTCTTG TCTCTGGTGGGACCGAGAAGGTTGTGCGTGTTTGGGACCCCCGTACTGGTTCAAAGGCTATGAAGCTAAGAGGGCATACCGATAACATTAGAGCGTTGCT TCTGGATTCTACTGGCAGGTATTGCTTATCAGGTTCTTCTGATTCTATGATCAGGCTGTGGGACCTTGGGATGCAGCGATGTGTGCATTCATATGCTGTG CATACAGATTCTGTTTGGGCACTTGCCAGCACTCCAACATTCAGCCATGTATACAGTGGTGGAAGGGACCTTTCTTTGTACTTGACAGACTTGGTGACAA GAGAGAGTCTTTTGCTTTGCACGAAAGAGCACCCGATTTTGCAATTGGCATTACATGATGACAGTATATGGGCTGCAACAACAGATTCTTCGGTTCATAG ATGGCCCGCTGAAGCACACAATCCTCAAAAGGTCTTTCAAAGAGGTGGTTCATTCTTGGCTGGTAACCTTTCCTTTTCAAGGGCAAGAGTTTCATTAGAA GGATCTACTCCAGTGCCAGTCTACAAAGAACCAACCTTAACCATTCCTGGAACTCCAGCAATAGTGCAGCATGAAATTTTAAATAATAGAAGGCATGTCT TGACTAAGGATACTGCTGGCTCAGTGAAGCTGTGGGAGATCACAAGGGGCATTGTAATTGAAGACTATGGGAAGGTGTCATTTGAGGAGAAAAAGGAACA ATTATTTGAAATGGTCAGCATTCCTGCATGGTTCACTGTGGATACCAGGCTTGGAAGCTTGTCTGTTCATTTGGACACACCACAATGCTTTTCAGCTGAG ATGTATTCAGCTGATCTTAACATAGCTGGGAAACCTGAGGATGATAAGGTTAATTTAGCTCGCGAAACCCTTAAGGGTTTGTTGGCTCATTGGTTGGCCA AGAGAAGGCACAGACTTGGTTCTCCAACTTCAGCTAATGGAGATGTTCTATCCGGAAAGGATTTTGCTCATAGAAGTCTTGGCCATTCTAGAGTTGAAGT AGACGGCGGTGCTGAAAATGACTCCAAGGTTTATCCTCCATTCGAATTTTCAACAGTTTCCCCTCCTTCGGTTGTTACTGAAGGCTCTCAAGGAGGTCCA TGGAGAAAGAAAATTACTGATTTAGATGGAAGCGAAGATGAAAAGGACTTCCCTTGGTGGTGTTTGGATTGTGTGTTGAACAATCGCCTACCTCCAAGAG AAAACACCAAGTGCAGCTTTTATCTGCATCCATGTGAAGGTTCAGCATTTCAGATCCTCACACAAGGCAAATTAAGTGCACCTCGCATCCTTAGAATTCA TAAAGTTGTCAATTATGTCGTAGAGAAGCTGGTCCTTGACAAACCACTGGATAATGTGAATACTGATGGAACATTTGCTCCTGGAATTGGAGGACCCTTG CAGCATTCAGTGGTTGGAGATGGATCTTTCCGATCTGGATTGAAGCCTTGGCAAAAGCTTAAGCCTTCCATAGAGATCTTGTGCAATAATCAGGTCTTAT CCCCGGAAATGAGTTTAGCTACAGTGCGAGCTTACATATGGAAGAAACCCGAGGATCTGACCCTTAATTACAGAGTAGTTCAGGGAAGGTGA
AA sequence Show only first row Show all	>Potri.013G033800.3 pacid=42810927 polypeptide=Potri.013G033800.3.p locus=Potri.013G033800 ID=Potri.013G033800.3.v4.1 annot-version=v4.1 MHRVGSAGNTNNSVRPRKEKRLTYVLSDADDTKHCAGINCLKVLKSTVSDGRDYLFTGSRDGTLKRWALSEDSATCSATFESHVDWVNDAVLAGDRTLVS CSSDTTLKAWNCLSDGTCTKTLRQHSDYVICLAAAEKNSNVVASGGLGGEVFIWDVEAALTPVSKSGDAMEDDCSNGVNGSANSLPVTSLRTISSSNSIS AHTSQSHGYVPVGAKGHKESVYALAMNDSGTRLVSGGTEKVVRVWDPRTGSKAMKLRGHTDNIRALLLDSTGRYCLSGSSDSMIRLWDLGMQRCVHSYAV HTDSVWALASTPTFSHVYSGGRDLSLYLTDLVTRESLLLCTKEHPILQLALHDDSIWAATTDSSVHRWPAEAHNPQKVFQRGGSFLAGNLSFSRARVSLE GSTPVPVYKEPTLTIPGTPAIVQHEILNNRRHVLTKDTAGSVKLWEITRGIVIEDYGKVSFEEKKEQLFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAE MYSADLNIAGKPEDDKVNLARETLKGLLAHWLAKRRHRLGSPTSANGDVLSGKDFAHRSLGHSRVEVDGGAENDSKVYPPFEFSTVSPPSVVTEGSQGGP WRKKITDLDGSEDEKDFPWWCLDCVLNNRLPPRENTKCSFYLHPCEGSAFQILTQGKLSAPRILRIHKVVNYVVEKLVLDKPLDNVNTDGTFAPGIGGPL QHSVVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPEMSLATVRAYIWKKPEDLTLNYRVVQGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.013G033800 [exp]	0	1
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	1.41	0.8402
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.005G171300 [exp]	3.46	0.8374
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Potri.001G350200 [exp]	6.24	0.8257
AT1G51350			ARM repeat superfamily protein...		Potri.009G053400 [exp]	7.93	0.7453
AT5G10900			Calcineurin-like metallo-phosp...		Potri.001G196600 [exp]	8.06	0.7953
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063000 [exp]	16.49	0.7573
AT1G31840			Tetratricopeptide repeat (TPR)...		Potri.015G036400 [exp]	17.23	0.7801
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	18.00	0.7934
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.010G090400 [exp]	18.70	0.7624
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	18.76	0.8100

Compare expression of checked genes

Potri.013G033800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.