Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27950 676 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55550 379 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27550 277 / 5e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22610 280 / 4e-82 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G72250 279 / 2e-81 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G65930 265 / 4e-76 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) AT4G05190 258 / 5e-76 ATK5 kinesin 5 (.1) AT4G21270 257 / 2e-75 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT4G27180 252 / 5e-74 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT5G54670 250 / 3e-73 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G000800 [exp] 392 / 9e-125 AT1G55550 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G223800 [exp] 389 / 7e-124 AT1G55550 647 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 287 / 1e-86 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G110600 [exp] 283 / 3e-83 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G030271 [exp] 275 / 3e-82 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G140000 [exp] 278 / 4e-81 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G416300 [exp] 265 / 7e-79 AT5G54670 1090 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.001G436200 [exp] 271 / 1e-78 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.004G031600 [exp] 265 / 2e-78 AT4G21270 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033849 [exp] 781 / 0 AT5G27950 662 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018999 [exp] 743 / 0 AT5G27950 617 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007629 [exp] 266 / 2e-78 AT4G21270 975 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10035954 [exp] 269 / 3e-78 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10018384 [exp] 264 / 7e-78 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10005582 [exp] 266 / 3e-77 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10004487 [exp] 262 / 5e-77 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029914 [exp] 261 / 6e-77 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013714 [exp] 266 / 7e-77 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 259 / 8e-75 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.013G033900.1 pacid=42811111 polypeptide=Potri.013G033900.1.p locus=Potri.013G033900 ID=Potri.013G033900.1.v4.1 annot-version=v4.1 ATGTTCATTCCTAGTGAAATGGAGCAGATCTCATTGCCTCTAGATAATGTAAAAGAGAAGTTGGAGCCAATGGAACCAAACCAGGATTACATTGATGCGT TCCAGTTAGAATCTGAGTTGACGGATTCACCACCATTACCTAACTCAACCATTTATACCGATGTCAATGTTGTTCCTGAGCATGAAAAGGGCGAGCTTGG GCATTCTATATCGAATCTAGAAGGTGAGATCGCAGGGTTGAAACAGAAGGAGAGATTGTTGGACAAGAAGCGCAGAGAAGCATTAAATAAGATATTGGAT ATTAAAGGCAGCATTAGAGTATTTTGTCGAGTGAGACCGTTCCTATTGTCAGATAGAAGAAGAATTCACGAACCCATTTCAATTGGGTTAGAGAAGGTGG TGGTTAAATCAGTTGGAATTAGGAAGGAGTACAGATATGATAAGGTTTTTCATCAAGCAGCTACTCAAGAAGATGTTTTTGTTGAGGTTGAACCTATCCT TAGATCTGCACTTGACGGGCACAATGTATGCATATTGGCTTATGGTCAAACTGGAACTGGCAAGACATTTACAATGGATGGCACAAATAACCAGGCTGGG ATCATTCCTCGAGCTATTGAAGAGCTTTTTCGTCAAGCCTCTTTGGATAACTCATCTATAACATTTTCAATGAGCATGCTGGAGGTTTACATGGGTAATC TTAGAGATCTACTTGCTCCAAAAGTGGCGAGTAGGACACATGAGGTTGCAGCAAAATGTTTAAATATTCAAACAGATCCAAAGGGAATGGTTGAAGTTGA AGGTCTGACACAGGTCCAAATACCTGATACTGCAAAGGCAAAATGGTGGTATGCTAAGGGCAGGCGGGCTAGATCTACTTCGTGGACTAATGTCAATGAG ACATCAAGCAGGTCACACTGCTTAATGAGGATCACCATTTCTCGACATGGAGATGATTCAAAAGCTAAAGCACAAGTGAGCAAACTATGGATGGTTGATC TCGGAGGAAGTGAGCGATTGTTGAAGACAGGGGCCACCGGACAGACACTCGATGAGGGAAGGGCCATAAATCTATCTCTTTCCGCTTTGGGTGATGTTAT CGCTGCTCTAAGAAGGAAGAGAGGCCATGTGCCTTACAGAAACAGCAAGTTAACTCAAATCCTCAAGGATTCCTTAGGTCATAGTTCAAAGGTTTTAATG CTTGTGCATATAAGCCCATGTGAAGAAGATGTTGGAGAGACAATCTGTTCTTTAAGCTTTGCAAATAGAGCAAGAGCGATTGAGACCTATCGAGATCTAA CAGAGGACATAAACATGCAAAGGCAGAAGAGAATTTTGGAACTCGAAGTAGAAATGAGAGAATCCGAAGAAGAGTGCCAGAAAGTTAGGTATCAAGTACA GAAGGCTGAGTTCCTACTGAGTGAAAACAGAGAGCTTTTGTCAACTACTTATCATGTTCCTGATGACAAGGAGAATGCACCTATAAGTCCCAAAGAAGAC TATAAGGAAGTCAATAGTACATCTCGAGTTACTGACAAAGGAATTAGGAGGAATATGACAAGTCCTTTCCCGCGATTCATGACTTCTACTGTGGCTAGTC GGCAAAGGCAAAGTGCTGCAGAAAAATTAGTTGTTGGGCGGGCAAGAAGTTTGAGATCCGCAACAAGAAGTTCATTACAATTTTCAGCTTCTCAGTCCTT CAGTTATTCAGAATTTCGCTTTAGAGCAATTTTAAAGGAATCAAATAGAAAGTCAAGATATGGCGAGACAAAACCTCTGCTCCCAGAGAGTCCCAAATGC AATGGCCCGGAGATGAAGATGGCCTCCTTGCCTCGAAGCAAGACAGTTATTTCATCAGATCCAAACTTGAGAACTACGCTTTCTCGTCACAGAAGAAGGA TGTCTGATCTAATCTAA
AA sequence Show only first row Show all	>Potri.013G033900.1 pacid=42811111 polypeptide=Potri.013G033900.1.p locus=Potri.013G033900 ID=Potri.013G033900.1.v4.1 annot-version=v4.1 MFIPSEMEQISLPLDNVKEKLEPMEPNQDYIDAFQLESELTDSPPLPNSTIYTDVNVVPEHEKGELGHSISNLEGEIAGLKQKERLLDKKRREALNKILD IKGSIRVFCRVRPFLLSDRRRIHEPISIGLEKVVVKSVGIRKEYRYDKVFHQAATQEDVFVEVEPILRSALDGHNVCILAYGQTGTGKTFTMDGTNNQAG IIPRAIEELFRQASLDNSSITFSMSMLEVYMGNLRDLLAPKVASRTHEVAAKCLNIQTDPKGMVEVEGLTQVQIPDTAKAKWWYAKGRRARSTSWTNVNE TSSRSHCLMRITISRHGDDSKAKAQVSKLWMVDLGGSERLLKTGATGQTLDEGRAINLSLSALGDVIAALRRKRGHVPYRNSKLTQILKDSLGHSSKVLM LVHISPCEEDVGETICSLSFANRARAIETYRDLTEDINMQRQKRILELEVEMRESEEECQKVRYQVQKAEFLLSENRELLSTTYHVPDDKENAPISPKED YKEVNSTSRVTDKGIRRNMTSPFPRFMTSTVASRQRQSAAEKLVVGRARSLRSATRSSLQFSASQSFSYSEFRFRAILKESNRKSRYGETKPLLPESPKC NGPEMKMASLPRSKTVISSDPNLRTTLSRHRRRMSDLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27950			P-loop containing nucleoside t...		Potri.013G033900 [exp]	0	1
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Potri.004G211800 [exp]	5.65	0.7452
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.006G114300 [exp]	8.88	0.8044
AT2G16405			Transducin/WD40 repeat-like su...		Potri.009G121100 [exp]	13.41	0.7312
AT2G34920		EDA18	embryo sac development arrest ...		Potri.003G156400 [exp]	14.07	0.7447
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	15.19	0.7535
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.010G051400 [exp]	17.02	0.7436
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.006G075800 [exp]	24.08	0.7716
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.001G018700 [exp]	26.53	0.7641
AT1G30440			Phototropic-responsive NPH3 fa...		Potri.001G357100 [exp]	31.98	0.7037
AT5G57670			Protein kinase superfamily pro...		Potri.018G096100 [exp]	49.47	0.6995

Compare expression of checked genes

Potri.013G033900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.