Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05100 481 / 5e-172 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046300 [exp] 593 / 0 AT3G05100 484 / 2e-173 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004147 [exp] 498 / 9e-179 AT3G05100 471 / 6e-168 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001712 [exp] 498 / 1e-178 AT3G05100 474 / 2e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019000 [exp] 474 / 3e-169 AT3G05100 462 / 1e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033850 [exp] 471 / 4e-168 AT3G05100 452 / 8e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G034000.1 pacid=42812526 polypeptide=Potri.013G034000.1.p locus=Potri.013G034000 ID=Potri.013G034000.1.v4.1 annot-version=v4.1 ATGGCACTGTCAACAGTAACATATTCACCAACACAAAAAGGAATAGTAATTTCAATTCCAACGTTGGTCCTTTCTGTTTCTGTAGGAGCAATAATGCTAT TCTTTCTCTTATCTTCGCTCTCTACATGTTCATGCCCTTCTTCTTTGCAAAGCTTTAATGATAATAACAATGGTCGGGGTGGGCTTGGCGAGGTTGATAA AAAAGAGAGAATATCTGCAACACAAGAGGATATTGAATGGATTATGGATCAGATCCAAGCTAATGGCTTACATATGCAAGATAATGTTCTTCGTAAAGGG ATTAATCCCCGTACTAGAGCTCAACAATTACAAGATCTCATTCAGTTCAAGGGCATATCACATTATGAAGGGCTAGTGTCAGATAACCACACTGCTCTCC CATGTCCTGGCGAGCTACTTGTGGAAGAGCACCATAGCAACTATGGGGAGCCCTGGGCTGGTGGACGCGATGTGTTTGAGTTCCTTGCAGAGTCCAGCCA CCTGTCACCCAATTCACGTGTGCTAGAGATTGGGTGTGGAACACTCCGTGTTGGCTTGCATTTCATTCGTTATCTCGTCCCTGAGCACTTCCATTGTCTT GAAAGAGACGAGCTCTCTCTGATGGCTGCATTCAGATACGAGCTTCCCTCTCAGGGTCTTTTACACAAGCGTCCTCTGATTGTGAAAGGTGAAGACATGG ATTTCTCCAAGTTTGGTTCTGGAGTTGTGTATGATTTGATATATGCTAGTGCTGTGTTTCTTCATATGCCTGATAAGCTTGTCTGGGCTGGACTGGAGAG ATTAGTGGGCATGCTGAAACCTTATGATGGCCTCATCTTCGTGTCACATAATATAAAGTTCTGTTCAAGACTTGGAGGTGAGGAATGTACTAAGAGGTTG ACCAGTCTGGGACTCGAGTATAGTGGAAAGCACACACATGATAGCTTGCTGTTTAATCACTATGAAATTTGGTTTGAATTTAGGCGGTCTAAAGCTTAG
AA sequence Show only first row Show all	>Potri.013G034000.1 pacid=42812526 polypeptide=Potri.013G034000.1.p locus=Potri.013G034000 ID=Potri.013G034000.1.v4.1 annot-version=v4.1 MALSTVTYSPTQKGIVISIPTLVLSVSVGAIMLFFLLSSLSTCSCPSSLQSFNDNNNGRGGLGEVDKKERISATQEDIEWIMDQIQANGLHMQDNVLRKG INPRTRAQQLQDLIQFKGISHYEGLVSDNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAESSHLSPNSRVLEIGCGTLRVGLHFIRYLVPEHFHCL ERDELSLMAAFRYELPSQGLLHKRPLIVKGEDMDFSKFGSGVVYDLIYASAVFLHMPDKLVWAGLERLVGMLKPYDGLIFVSHNIKFCSRLGGEECTKRL TSLGLEYSGKHTHDSLLFNHYEIWFEFRRSKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05100			S-adenosyl-L-methionine-depend...		Potri.013G034000 [exp]	0	1
AT4G30010			unknown protein		Potri.006G075600 [exp]	1.00	0.9124
AT4G29735			unknown protein		Potri.006G146800 [exp]	2.00	0.8736
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.006G249400 [exp]	3.87	0.8702	HTA906
AT5G47890			NADH-ubiquinone oxidoreductase...		Potri.003G159100 [exp]	4.00	0.8505
AT5G46150			LEM3 (ligand-effect modulator ...		Potri.011G082100 [exp]	5.19	0.8353
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Potri.013G071100 [exp]	6.24	0.8265	TFCFA,Pt-KIS.1
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.006G066700 [exp]	6.63	0.8325
AT1G16020			Protein of unknown function (D...		Potri.008G137000 [exp]	7.48	0.8255
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.001G277900 [exp]	8.48	0.8409	Pt-SAD1.2
AT1G80500			SNARE-like superfamily protein...		Potri.003G183400 [exp]	10.95	0.8314

Compare expression of checked genes

Potri.013G034000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.