Plant FIBer expression Database

Potri.013G034100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04950 290 / 3e-100 unknown protein
AT5G67170 40 / 0.0007 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000934
[exp]
251 / 2e-82 AT3G04950 256 / 8e-84 unknown protein
Lus10022395
[exp]
103 / 2e-28 AT3G04950 92 / 7e-24 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02810 SEC-C SEC-C motif
Representative CDS sequence
>Potri.013G034100.1 pacid=42811799 polypeptide=Potri.013G034100.1.p locus=Potri.013G034100 ID=Potri.013G034100.1.v4.1 annot-version=v4.1
ATGAATTCTCCAAGGATTCTGTTCAACATTTCCCAGAAAAACCCTAAATTTCTCTCCTTGTGCTCCCTAAGCTATTCTCACATTGACAGTCACCTCATTA
CGTCACAGCACCGCTTGATTTCCTCCACTGCGCCAGTGAGTTCATGGATGGACACCATCAAAGGTGTCTTCACTGGAAAAAAGGCAGAAACTGAAGACAC
CCCAGAGTCATTCACGTTACTCAGCTTTGCAGATGGGATGAAGAATGCGAGGAGGGTTGGATCGCTAAAGCAATTCGTCGTTGGTAGAAGCAGTGAAGCG
ACTTTTTCTAGTGCCTTTGAAAAGCAGGAAGCAATAATTCGATATCTAGGTGCACTTGATCCCACTGGAGAGAACCTCCAAACAAGTCAAAAACAAGAAG
CAGCGAAGCACTGTAATTGCACAATAGCAGATGTTGAGATTACACTTTCTAAGTTTATATGGGCTAAAGAAGCACAGAATAAGTTGCAAAAATTAAAGGA
AGAAGGGAAACCAATGCCGAAGACCATGGCTGAGGTCCAGAAGTTGATGGGATCGACACCATTGGATCTTGCTCGGTCTAATTTGGGTAAGAGTGGGCAG
ATCAGCAAAAATGCACCCTGTCCATGTGGTTCCAAGAAGAAATACAAACGGTGCTGTGGAAAGGATTGA
AA sequence
>Potri.013G034100.1 pacid=42811799 polypeptide=Potri.013G034100.1.p locus=Potri.013G034100 ID=Potri.013G034100.1.v4.1 annot-version=v4.1
MNSPRILFNISQKNPKFLSLCSLSYSHIDSHLITSQHRLISSTAPVSSWMDTIKGVFTGKKAETEDTPESFTLLSFADGMKNARRVGSLKQFVVGRSSEA
TFSSAFEKQEAIIRYLGALDPTGENLQTSQKQEAAKHCNCTIADVEITLSKFIWAKEAQNKLQKLKEEGKPMPKTMAEVQKLMGSTPLDLARSNLGKSGQ
ISKNAPCPCGSKKKYKRCCGKD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G04950 unknown protein Potri.013G034100
[exp]
0 1
AT1G29250 Alba DNA/RNA-binding protein (... Potri.018G029300
[exp]
2.44 0.7932
AT1G57540 unknown protein Potri.005G002900
[exp]
12.32 0.7267
AT3G13570 SCL30A, At-SCL3... SC35-like splicing factor 30A ... Potri.001G006400
[exp]
12.48 0.6515 Pt-SCL33.2
AT3G13230 RNA-binding KH domain-containi... Potri.011G166000
[exp]
14.83 0.6970
AT5G10350 RNA-binding (RRM/RBD/RNP motif... Potri.005G073200
[exp]
19.36 0.6958
AT4G00850 GIF3 GRF1-interacting factor 3 (.1) Potri.014G103900
[exp]
20.12 0.6728 GIF2.2
AT3G59280 TXR1 THAXTOMIN A RESISTANT 1, Prote... Potri.015G106600
[exp]
21.21 0.6810
AT4G18100 Ribosomal protein L32e (.1) Potri.011G078200
[exp]
24.79 0.7173 RPL32.1
AT1G06010 unknown protein Potri.012G134200
[exp]
26.45 0.6730
AT2G20060 Ribosomal protein L4/L1 family... Potri.004G004800
[exp]
29.66 0.6806

Potri.013G034100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.