Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12300 478 / 8e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 480 / 2e-161 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G62930 475 / 5e-161 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 466 / 1e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 463 / 3e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 459 / 2e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 457 / 4e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 454 / 1e-152 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63080 452 / 4e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032600 [exp] 949 / 0 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 934 / 0 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 801 / 0 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 796 / 0 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 787 / 0 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 775 / 0 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 768 / 0 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 768 / 0 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 766 / 0 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014245 [exp] 497 / 5e-170 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 491 / 2e-166 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 481 / 3e-162 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10008593 [exp] 472 / 3e-160 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 454 / 2e-153 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 446 / 4e-150 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 402 / 3e-133 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 359 / 2e-116 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024962 [exp] 354 / 2e-115 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003427 [exp] 341 / 4e-112 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G034400.2 pacid=42812003 polypeptide=Potri.013G034400.2.p locus=Potri.013G034400 ID=Potri.013G034400.2.v4.1 annot-version=v4.1 ATGCTTTCGCGTTCGCTTTCGCTTTCGCTTTCGAACATGATGATGCGGAAAAGCACTTTCGTAGCTTCTGCTTCTTGTGCTTTTCAGCTTCTTCAACAAC AACAAATGGAAACGGGTACTTTTCCTAAATTCCGTTCTTTCTTATTCTTCATTCACCAGCACTTCACTACTTCTACAGCCTCTACCACCAACATTAGCCC TTCCTCCATAACAAATGGTGGGTTTTGTAGTAACTATAACAATCTTCATAGTGTTGCCGATGCCGTTGCTTCTTTCAATCAGTTGCTTGGCATTCGTCCA TTGCCACCCGTTGTGGTGTTTAACAAGTTATTAGGGTCCCTTGTGAAAAAGAAACATTACTCAACTGTAATTTCCCTCTGCAAACAAATGGATTTGTCAA ATATCAGACCTAATGTTTATACTCTTACCATTTTGATTAACTGCCTCTGCCACTCCAACCGTGATCATGTTCACTTTGCTTTCTCTGCTCTGGGTAAAAT GTTCAAACTTGGTCTTCAACCTACTCATGTCACTTTCGGCACCCTCCTTAACGGCCTTTGCTCTAAGGCCAAAATCATCGATGCTGTAAAATTATTTGAT GAGATGGGAAAGATGGGTTTTGCACCTAGTTTGATTACTTATACTACTATAATTAAAGGTTTATGCAAAATCGGCCACACGACCAATGCACTTCAGTTGC TCAAGAAGATGGAAGAAAAAGGTTGTAAGCCAGATGTGGTGGCATATAACACAGTCATAGATAGCCTTTGTAAAGATAGACGGGCCAATGAAGCCATGTA CTTCTTTTCTGAAATGGTGGATCAGGGCATTCCACCAAATGTTGTTACCTACAGCTCAATTCTGCACGGTTTTTGCAATTTGGGTCAGTTGAATGAAGCA ACAAGCTTGTTCAAACAAATGATTGGAAGGAATGTTATGCCAAATACGGTGACATTCACTATTTTGGTTGATGGACTCTGCAAAGAAGGGATGATTTTAG AAGCTCGGCGTGTCTTTGAAATGATGACTGAAAACGGTGTAGAACCAGATGCTTACACTTACAGTGCTTTGATGGACGGATACTGTTTACAAAGCCAAAT GGATGAGGCCCAAAAATTGTTCGACATCATGGTTGGCAAGGGTTTTGCACCTAGTGTTCGAGTTTACAACATACTAATCAATGGGCACTGTAAGAGTAGA AGGCTGAATGAGGCGAAAACACTCCTTTCTGAAATGTATGACAGAGATTTGACTCCCGATACTGTCACTTACAGTACTCTTATGCAAGGTTTTTGCCAAG CAGGGAGACCTCAGGTTGCACAGAAGCTTTTTAAGGAGATGTGTTCTTATGGCCTGCTTCCAGATTCGATTACTTATTCGATTTTGCTAGATGGCTTATG CAAACATGGACATTTGGATGAGGCATTCAGACTGCTCAAGGCAATGCAGGAGAGCAAGATAGAGCCGCATATTTGCATTTATAATATCCTTATTCAAGGG ATGTGCAATTTTGGCAAGCTTGAAGCTGCAAGGGAACTGTTCTCCAATCTTTTTGTTAAAGGAATACAACCTACTGTGGTTACATATACTGTCATGATCA GTGGACTTTTGAAAGAAGGACTATCAAATGAAGCATGTGAGATGTTTAGGAAAATGGTAGTTAATGGCTGCTTGCCGAATAGTTGCACTTATAACGTTGC AATCCAAGGATTTCTTCGGAACGGTGACCCATCAAATGCAGTGCGACTAATTGAAGAAATGGTTGGTAGAGGATTCTCTGCAGATTCGTCTACATTTCAG ATGTTATTGGATTTGGAATCCAATGATGAAATCATAAGTCGATTTATGCGTCGAAGCTCTTAA
AA sequence Show only first row Show all	>Potri.013G034400.2 pacid=42812003 polypeptide=Potri.013G034400.2.p locus=Potri.013G034400 ID=Potri.013G034400.2.v4.1 annot-version=v4.1 MLSRSLSLSLSNMMMRKSTFVASASCAFQLLQQQQMETGTFPKFRSFLFFIHQHFTTSTASTTNISPSSITNGGFCSNYNNLHSVADAVASFNQLLGIRP LPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFD EMGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEA TSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSR RLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQG MCNFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQ MLLDLESNDEIISRFMRRSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.013G034400 [exp]	0	1
AT2G20740			Tetraspanin family protein (.1...		Potri.011G050900 [exp]	2.64	0.9160
AT3G14760			unknown protein		Potri.011G103500 [exp]	2.64	0.8944
AT1G04880	ARID		HMG (high mobility group) box ...		Potri.017G055200 [exp]	5.47	0.9011
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Potri.002G229900 [exp]	6.48	0.8624	GLR3.3
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	6.92	0.9006
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Potri.014G170300 [exp]	8.00	0.8974
AT1G60010			unknown protein		Potri.008G146500 [exp]	8.66	0.8815
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Potri.003G037800 [exp]	13.63	0.8565
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	13.78	0.8892
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G023200 [exp]	14.00	0.8144

Compare expression of checked genes

Potri.013G034400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.