Plant FIBer expression Database

Potri.013G034600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G084100
[exp]
47 / 1e-06 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1)
Potri.004G130900
[exp]
39 / 0.0007 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.013G034600.1 pacid=42811300 polypeptide=Potri.013G034600.1.p locus=Potri.013G034600 ID=Potri.013G034600.1.v4.1 annot-version=v4.1
ATGTTGTCCCGTGGTGATAGCCATTCCTCTCTTTGTCATCTCTGTGTTGAGGCAGCTATGAAAAAGCTAGCTGACCCTGGGAACACAGACTTTGACAAGC
ACTTGGCTGAACACAAGGCCACTCTGGATAAGCTTAACAAACAGTATTTTGATAACCTCAAAGAATTGGATGCCCTAAAGCGGCGAGGGAAGGAACTTGA
GGAGCTGGAGAAGGTGGCCCGTAGCAAGTCTTTGTTTGGTGCGCCAATTAATGAACTCAGCTTGCACGAGTTGGAAATGCTACGGAAGTCCTTGAAAGAA
ATTAAGGAAAACATATTGAAGCAAATTGAGAAGATTTCTGCGGACACTGAAAATCCAACCTCATCCTCCTCTGCGAATATCGCTGGAGTCATCAATCCTT
CTGTGAGTAGCACTGCCAGGGGTTCTTCCTCTGCTGATGTCAATGACCATGATGATGGCCATGGACATTAA
AA sequence
>Potri.013G034600.1 pacid=42811300 polypeptide=Potri.013G034600.1.p locus=Potri.013G034600 ID=Potri.013G034600.1.v4.1 annot-version=v4.1
MLSRGDSHSSLCHLCVEAAMKKLADPGNTDFDKHLAEHKATLDKLNKQYFDNLKELDALKRRGKELEELEKVARSKSLFGAPINELSLHELEMLRKSLKE
IKENILKQIEKISADTENPTSSSSANIAGVINPSVSSTARGSSSADVNDHDDGHGH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G034600
[exp]
0 1
AT1G50730 unknown protein Potri.001G356700
[exp]
1.73 0.8345
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.005G147700
[exp]
8.66 0.8180
AT5G44280 ATRING1A ARABIDOPSIS THALIANA RING 1A, ... Potri.004G047000
[exp]
8.94 0.8152
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Potri.014G036800
[exp]
11.83 0.8101
ATCG01280 ATCG01280.1, YC... Chloroplast Ycf2;ATPase, AAA t... Potri.001G152150
[exp]
15.23 0.8076
AT5G04930 ALA1 aminophospholipid ATPase 1 (.1... Potri.006G109200
[exp]
15.81 0.8189
AT5G12370 SEC10 exocyst complex component sec1... Potri.002G164100
[exp]
18.97 0.8012
AT1G31870 unknown protein Potri.001G147100
[exp]
20.34 0.7691
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.009G078700
[exp]
22.22 0.7508
AT1G63690 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE ... Potri.001G103100
[exp]
27.38 0.8126

Potri.013G034600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.