Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27990 126 / 1e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) AT3G22510 82 / 3e-20 Pre-rRNA-processing protein TSR2, conserved region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G047901 [exp] 303 / 1e-105 AT5G27990 124 / 7e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) Potri.010G086800 [exp] 122 / 1e-35 AT3G22510 98 / 2e-27 Pre-rRNA-processing protein TSR2, conserved region (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006795 [exp] 204 / 6e-67 AT5G27990 107 / 2e-29 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10005806 [exp] 202 / 7e-66 AT5G27990 107 / 4e-29 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10027901 [exp] 108 / 2e-29 AT5G27990 79 / 3e-18 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10002404 [exp] 107 / 5e-29 AT5G27990 77 / 1e-17 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10006124 [exp] 95 / 3e-22 AT3G22520 340 / 4e-106 unknown protein Lus10010551 [exp] 41 / 0.0004 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10273 [poplar] [flax] WGG Pre-rRNA-processing protein TSR2
Representative CDS sequence Show only first row Show all	>Potri.013G035000.1 pacid=42811313 polypeptide=Potri.013G035000.1.p locus=Potri.013G035000 ID=Potri.013G035000.1.v4.1 annot-version=v4.1 ATGGAGAGCAGCAGCAGCAGCATAAATGGAGGATTTTCCCAAATTGGGTCTGTCAAACAACTAACAGCAGATTCTATTTCTCAATTCAGAGAAGGGATTC GGTTAATTCTCTCTAAATGGTCAGCTTTGCAACTCGCCGTTGAAAACGAATGGGGTGGCCGTGGGTCTCACCTATTAGCTGAGCAACTAGCCTCTGATAT CTTCTCTTGGTTCACTCAGTCTAAAGAGCCGCTTTATATTGATGATTTGGAGAGTATCATGGATGAAGCTATGCTTTCTCTCAATACCATGATTGAGGAT GGTAGCGTTGAAGAGGTAGCTGAAAAATTAATGATTATGCATGAAGAATGTTTAGAAGGCAATTATAGTTCTATTCAAAAGTTGAGGGATGAAGGTCCTA GAATGGGAGCTCATCAACATGTCAAACAGGCTGTGGAGGATGATGATGATTCTGAGGACAGCGACAGTGATGATAAAATGGGTGATGATGGATCAAACAT GATGGTGGATACACCAGAATTCCAATTAAAGACAAATCTAGTAAACAAGCCAGTCAATGAGCCAGGGGCCAAGGAAGCTCAATCAGAAGATGGATGGACA GTTGTTTCATCTAGGCGAAACAAGGGTAAAAGGAATTAG
AA sequence Show only first row Show all	>Potri.013G035000.1 pacid=42811313 polypeptide=Potri.013G035000.1.p locus=Potri.013G035000 ID=Potri.013G035000.1.v4.1 annot-version=v4.1 MESSSSSINGGFSQIGSVKQLTADSISQFREGIRLILSKWSALQLAVENEWGGRGSHLLAEQLASDIFSWFTQSKEPLYIDDLESIMDEAMLSLNTMIED GSVEEVAEKLMIMHEECLEGNYSSIQKLRDEGPRMGAHQHVKQAVEDDDDSEDSDSDDKMGDDGSNMMVDTPEFQLKTNLVNKPVNEPGAKEAQSEDGWT VVSSRRNKGKRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27990			Pre-rRNA-processing protein TS...		Potri.013G035000 [exp]	0	1
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.008G060000 [exp]	1.41	0.8606	Pt-EIF3.1
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Potri.001G072100 [exp]	1.73	0.8447
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.002G062500 [exp]	4.35	0.8102
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Potri.013G080200 [exp]	6.32	0.8403
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Potri.009G067500 [exp]	6.63	0.8624
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.006G275100 [exp]	7.34	0.8116	Pt-AJH1.2
AT3G18165		MOS4	modifier of snc1,4 (.1)		Potri.015G041800 [exp]	8.06	0.8193
AT2G04230			FBD, F-box and Leucine Rich Re...		Potri.004G020200 [exp]	13.26	0.8095
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.001G236900 [exp]	14.07	0.7962
AT3G62840			Small nuclear ribonucleoprotei...		Potri.002G204300 [exp]	15.09	0.7726

Compare expression of checked genes

Potri.013G035000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.