Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27970 2284 / 0 ARM repeat superfamily protein (.1.2) AT3G43300 124 / 3e-28 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) AT3G60860 105 / 3e-22 SEC7-like guanine nucleotide exchange family protein (.1) AT1G01960 80 / 2e-14 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT1G13980 74 / 7e-13 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT4G38200 69 / 4e-11 SEC7-like guanine nucleotide exchange family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216900 [exp] 115 / 3e-25 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Potri.014G070600 [exp] 96 / 2e-19 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 93 / 1e-18 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 62 / 5e-09 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.017G078800 [exp] 50 / 2e-05 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000943 [exp] 2369 / 0 AT5G27970 2064 / 0.0 ARM repeat superfamily protein (.1.2) Lus10004115 [exp] 678 / 0 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10004116 [exp] 281 / 1e-86 AT5G27970 221 / 7e-67 ARM repeat superfamily protein (.1.2) Lus10009803 [exp] 131 / 4e-30 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10038084 [exp] 108 / 5e-23 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10009300 [exp] 95 / 6e-19 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009244 [exp] 91 / 1e-17 AT3G60860 1579 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10004117 [exp] 69 / 7e-14 AT5G27970 71 / 5e-16 ARM repeat superfamily protein (.1.2) Lus10001620 [exp] 58 / 1e-07 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022983 [exp] 56 / 3e-07 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09324 [poplar] [flax] DUF1981 Domain of unknown function (DUF1981) PF12783 [poplar] [flax] Sec7_N Guanine nucleotide exchange factor in Golgi transport N-terminal PF16206 [poplar] [flax] Mon2_C C-terminal region of Mon2 protein PF16213 [poplar] [flax] DCB Dimerisation and cyclophilin-binding domain of Mon2
Representative CDS sequence Show only first row Show all	>Potri.013G035100.1 pacid=42812232 polypeptide=Potri.013G035100.1.p locus=Potri.013G035100 ID=Potri.013G035100.1.v4.1 annot-version=v4.1 ATGGCGTTCATGGCAGTATTGGAATCCGATCTCCGATCTCTGTCCTCCGAAGCTCGCCGACGTTACCCTGCCGTTAAAGACGGCGCTGAACATGCCATTT TAAAGCTTCGATCGCTATCAAGTCCTAGTGAAATTGCAGATAATGAGGATATTCTGCGAATATTTTTGATGGCTTGTGAGGTTAGAACGGTAAAGTTGAG TGTGATTGGGCTTTCCTGTCTACAAAAGCTCATATCCCATGATGCAGTTGCTCCATCAGCTCTGAAAGAAATCCTTTCTACACTGAAAACTCATGCTGAA ATGGCAGATGAGAGTGTTCAACTTAAGACTCTACAGACTATATTAATAATATTTCAGTCACGTTTACATCCTGAAAGTGAGGCGAATATGGCACAAGCCC TTCATATATGTCTTCGGCTTCTTGAAAATAACCGATCCTCTGATAGTGTGCGAAACACTGCCGCGGCTACCATCAGACAGGCAGTAGCATTGATTTTTGA TCATGTGGTTCATGTCGAGTCTCTTCCAGTGGGAAAGTTTGGTTCTGGAGGTCATATTTCTCGATCCAGTTCAGTAACTGGTGATGTTAATCGCAGCATC AATAATTCAGAGTCATGGGAGCATGAAATTGTTTCCAGAGGGCAATCATTGATGAGGGAGACACTAACAAATGCTGGAAAGCTTGGGCTTCGTTTACTTG AAGACCTGACAGCTCTTGCTGCAGGTGGATCTGCGATTTGGTTACATGTCAATTCTCTCCAACGGATATTTGCACTTGATATACTTGAGTTCATTCTATC CAATTATGTGGTTATTTTCAAGGTTTTGGTTCCTTATGAACAGGTTTTGCGTCACCAGATATGTTCACTTTTGATGACTTCACTTCGTACCAATGCCGAG CTTGAAGGAGAAGCTGGAGAGCCTTCTTTTCGTCGGTTAGTGTTGAGATCAGTTGCTCATATTATCAGGCTGTACAGCGCATCCCTTATCACTGAGTGTG AGGTTTTCCTTAGCATGCTTGTGAAGGTTACTTCTCTTGATCTGCCATTGTGGCATCGGATTCTTGTGCTTGAAATCTTGAGGGGTTTTTGTGTGGAGGC ACGGACTTTAAGAACTCTTTTCCAGAACTTTGATATGCATCCTAAGAACACAAATGTTGTGGAGGGAATGGTTAAAGCTCTTGCTCGAGTTGTTTCAAAT GTACAGGTTCAAGAAACAAGTGAGGAGAGCCTGGCAGCTGTTGCTGGGATGTTTAGCAGCAAAGCCAAAGGTATTGAATGGATCCTTGATAATGATGCAT CCAATGCTGCTGTGCTGGTTGCTAGTGAAGCCCATGCAATAACTGTGGCAGTTGAAGGGCTGTTGGGTGTCATCTTCACTGTAGCTACTTTAACAGATGA AGCAGTGGATGTTGGGGAGCTTGATTCCCCCAGATATGAGTATGATCCTGTGGAAAGATATAGTGGGAAAACCACAGTTCTCTGCATTGCAATGGTTGAT TCTTTGTGGTTGACAATCCTTGATGCTTTGTCCCTTATTTTGTCAAGGTCGCAAGGAGAGGCTATTGTGTTGGAAATATTGAAGGGATACCAGGCATTCA CTCAGGCATGTGGGGTTCTTCATGCTGTAGAACCTTTGAATTCTTTTCTAGCATCACTTTGCAAATTCACTATCAATTTTCCAAACGAAGCAGAAAAGAG GAGTGCAGGACTGTCTCCTGGGTCAAAACGTTCTGAGGCATTAGTTGAACAGAGAGATAGCATAGTCCTTACTCAAAAGAATGTGCAGGCCTTAAGGACT CTCTTCAATGTTGCTCATCGGTTACACAATGTTTTGGGGCCTTCATGGGTTTTGGTGCTGGAAACTCTAGCAGCTCTAGACCGAACAATTCATTCTCCAC ATGCCACCACACAGGAGGTCTCTATGCCTGTACCCAAGCTTACAAGAGAATCTTCTGGCCAGTACAGCGACTTCAGCATTTTGTCTTCTTTGAATTCTCA ACTGTTTGAGAGCTCAGCAATGATGCACATATCTGCAGTTAAATCACTTCTTTCTGCACTATGTCAACTGTCACATCAATGCATGTTGGGGACGTCAAGT GGTGTTGGGTTAGCAGTGAGCCAAAAAATTGGAAGCATCACTTTCTCGGTGGAAAGGATGATATCCATCCTTGTTAATAATCTTCACAGAGTGGAGCCAT TGTGGGATCACGTTGTGGGCCATTTTCTTGAGCTTGCTGATAATCCAAATCAGCATTTACGAAACATGGCACTTGATGCGTTGGATCAATCAATATGTGC TGTTTTAGGTTCTGAACAGTTCCAGGATTATGTGTCATCCAGACTCCAGGAGACATCTCATGAAATGGAAGCTGGGGATTCACAGTTGAAATTACTCGAG TGTTCTGTCATATCCCCCCTTAGAGTTCTTTATTCTTCTACTCAAAGCATTGATGTCCGTGCTGGATCCTTGAAAATTCTTCTGCATGTGTTGGAGAGGC ATGGAGAAAAACTACACTACAGTTGGCTAAATATTCTTGAAATGTTAAGATCTGTTGCAGATGCATCAGAGAAAGATCTTGTAACCCTGGGCTTCCAGAA CCTGCGTGTCATCATGAATGATGGGCTGACCTCTATTCCTGCAGACTGTCTCCATGTATGTGTAGATGTTACTGGGGCATACAGTGCTCAAAAGACTGAG TTGAATATAAGCTTGACAGCAATAGGTCTCTTATGGACCACGACTGATTTCATTGTCAAGGGACTTCTGCATGGACCTACTGAGGGAAAGGAAACAGGTT TTCACGATGAGCATTCTGTTATGAAGCAAATAAATGGTGACTTGGGGGAGACACTGTCTTCTGAATTGCCTGATAAGGTGAATGATCGGGCTGCAACAAT TAATATAATTGACTGCGACAAGTTGCTTTTCTCTGTTTTCTCCTTACTTCAAACACTTGGAGCTGATGATAGACCAGAGGTCAGAAATGCAGCTGTCAGG ACGCTTTTCCAAACTCTTGGAAGTCATGGGCAAAAGCTTTCAAAAAGCATGTGGGAGGACTGTCTTTGGAATTATGTTTTCCCTGCTGTGGATCGTGCTT CTCACATGGCTGCGACTTCATCAAAAGATGAATGGCAAGGGAAAGAACTAGGTACTCGAGGAGGAAAGGCAGTTCACATGTTGATTCATCATAGTCGCAA CACGGTTCAGAAACAGTGGGATGAAACACTTGTGTTGGTCCTTGGTGGAATAGCACGTTTGTTACGTTCTTTCTTCCCTTTACTCAGTGACTTGAGCAAT TTTTGGTCAGGATGGGAGTCTTTGCTGCTTCTATTAAGAAATAGCATTTTAAATGGTAGTAAAGAGGTGGCCATTGCTGCAATAAATTGTTTACAGACAA CTGTTCATTCCCACTGTTCCAAGGGGAACTTGCCGCTCCCATACCTTAACTCCATACTTGATGTCTATGGGCATATTCTTCAAAAATCACCAAACTACAA TGATAATGCAGCTAGCAAGGTGAAGCAAGAGATTTTACATGGTCTTGGAGAACTATATGTGCAAGCACAGAAGATGTTTGATGCTAAGATGTTCTCTCAG TTGCTTGGAACAATAGATTTGGCAGTTAAGGAAGCTACATTGACTAATGATAACTTTGAAACTGAATTTGGACATGTTCCTCCCGTTTTACGCACTATAC TGGAAATCTTACCATTGTTATGTCCAACTGAGTATATTTCTTCAATGTGGCCAATCCTTCTTCGGGAGCTGTTGCAATATCTCCCAAAATCATATTCTTC TTTACAAAAAGAGGAAGCTGATGCAAGGCAAGCCAGCATTACTGACAAAAGCCCAGACAATAACATTAGGAAGCAAAATGAAATTCTCAATGGTACCACT TCTGTGTCCCCAAAGAAAGCTGGAGATCCATCACAAGGTTCTGGATCAAGCACAACTATAGTAGCTGGTATTCCAAGTTATTTGTTTGCAGAAAAGCTTG TCCCTGTGCTGTTAGATCTTCTTCTAAAGGCTCCAACAATTGAAAAGCATATTGTATTTCCTGAAATTATTCAAACCCTTGGAAGGTGTATGACAACAAG AAGAGACAACCCAGATGGTTCACTTTGGCGAGTAGCTGTTGAAGGTTTTAACAGAATTATTGTTGATGATGTAAGCGGATTCACCTTGAACTGTGGAACA GATTCAAAGATCAGCAAAACTGCAAGTATGCGCATCTGGAAAGAAGTAGCAGATGTTTATGAGATATTCCTTGTGGGATATTGTGGGCGTGCCATTCCTT CCAACTCTCTCTCATCTGAGGCGCTTAGGGCTGATGAGGCACTTGAGATGACCATTTTGAACATTCTTGGTGACAAGATTCTTAAGTCACCGATTGATGC ACCTTCCGAGATTCTGCAACGTTTAGTTTTGACCATGGACCGCTGTGCATCGCGCACATGCTCTTTGCCGGTTGAGACTGTGGAACTTATGCCATTGCAC TGTAGCAGATTTTCCCTGGCTTGCTTACGGACGTTATTTTCCCTAAGCAGCTGTGACGAGGCCAGTGACTGGAACATGACGAGGTGTGAAGTCAGCAAAA TCTCAATCGTGGTACTTTTGACCAGATGTGAAGACATCTTTAAAAGATTCTTGATTGATGAAAATGACCTAGGTGAACGTCCGCTGCCAACAACAAGGCT TGAAGAAATTATCTATGCCCTTCAAGAACTGGCTAATCTAATAATTCACTCAGAAACAGCATCTGTGCTACCATTGCATCCTTATTTGAGAAGCGGCTTA TCAGATGATGAGGATCATGAGAAGCGTCCACATCTGCTTGCTTTATTTCCCTCTTTTTGTGAGCTCATAATAACAAGGGAAGCAAGAGTGAGAGAGCTGG TGCAAGTCTTAATGAGACACATCACCAGAGAATTGGCACTAGAGAAGGTTAACATTGCCAGTTGA
AA sequence Show only first row Show all	>Potri.013G035100.1 pacid=42812232 polypeptide=Potri.013G035100.1.p locus=Potri.013G035100 ID=Potri.013G035100.1.v4.1 annot-version=v4.1 MAFMAVLESDLRSLSSEARRRYPAVKDGAEHAILKLRSLSSPSEIADNEDILRIFLMACEVRTVKLSVIGLSCLQKLISHDAVAPSALKEILSTLKTHAE MADESVQLKTLQTILIIFQSRLHPESEANMAQALHICLRLLENNRSSDSVRNTAAATIRQAVALIFDHVVHVESLPVGKFGSGGHISRSSSVTGDVNRSI NNSESWEHEIVSRGQSLMRETLTNAGKLGLRLLEDLTALAAGGSAIWLHVNSLQRIFALDILEFILSNYVVIFKVLVPYEQVLRHQICSLLMTSLRTNAE LEGEAGEPSFRRLVLRSVAHIIRLYSASLITECEVFLSMLVKVTSLDLPLWHRILVLEILRGFCVEARTLRTLFQNFDMHPKNTNVVEGMVKALARVVSN VQVQETSEESLAAVAGMFSSKAKGIEWILDNDASNAAVLVASEAHAITVAVEGLLGVIFTVATLTDEAVDVGELDSPRYEYDPVERYSGKTTVLCIAMVD SLWLTILDALSLILSRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINFPNEAEKRSAGLSPGSKRSEALVEQRDSIVLTQKNVQALRT LFNVAHRLHNVLGPSWVLVLETLAALDRTIHSPHATTQEVSMPVPKLTRESSGQYSDFSILSSLNSQLFESSAMMHISAVKSLLSALCQLSHQCMLGTSS GVGLAVSQKIGSITFSVERMISILVNNLHRVEPLWDHVVGHFLELADNPNQHLRNMALDALDQSICAVLGSEQFQDYVSSRLQETSHEMEAGDSQLKLLE CSVISPLRVLYSSTQSIDVRAGSLKILLHVLERHGEKLHYSWLNILEMLRSVADASEKDLVTLGFQNLRVIMNDGLTSIPADCLHVCVDVTGAYSAQKTE LNISLTAIGLLWTTTDFIVKGLLHGPTEGKETGFHDEHSVMKQINGDLGETLSSELPDKVNDRAATINIIDCDKLLFSVFSLLQTLGADDRPEVRNAAVR TLFQTLGSHGQKLSKSMWEDCLWNYVFPAVDRASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTVQKQWDETLVLVLGGIARLLRSFFPLLSDLSN FWSGWESLLLLLRNSILNGSKEVAIAAINCLQTTVHSHCSKGNLPLPYLNSILDVYGHILQKSPNYNDNAASKVKQEILHGLGELYVQAQKMFDAKMFSQ LLGTIDLAVKEATLTNDNFETEFGHVPPVLRTILEILPLLCPTEYISSMWPILLRELLQYLPKSYSSLQKEEADARQASITDKSPDNNIRKQNEILNGTT SVSPKKAGDPSQGSGSSTTIVAGIPSYLFAEKLVPVLLDLLLKAPTIEKHIVFPEIIQTLGRCMTTRRDNPDGSLWRVAVEGFNRIIVDDVSGFTLNCGT DSKISKTASMRIWKEVADVYEIFLVGYCGRAIPSNSLSSEALRADEALEMTILNILGDKILKSPIDAPSEILQRLVLTMDRCASRTCSLPVETVELMPLH CSRFSLACLRTLFSLSSCDEASDWNMTRCEVSKISIVVLLTRCEDIFKRFLIDENDLGERPLPTTRLEEIIYALQELANLIIHSETASVLPLHPYLRSGL SDDEDHEKRPHLLALFPSFCELIITREARVRELVQVLMRHITRELALEKVNIAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27970			ARM repeat superfamily protein...		Potri.013G035100 [exp]	0	1
AT1G20760			Calcium-binding EF hand family...		Potri.005G253000 [exp]	1.00	0.7865
AT1G71410			ARM repeat superfamily protein...		Potri.013G098700 [exp]	2.82	0.7787
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Potri.001G185050 [exp]	4.00	0.7733
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Potri.018G072600 [exp]	7.74	0.7768
AT2G27900			unknown protein		Potri.009G002900 [exp]	9.00	0.7579
AT1G02890			AAA-type ATPase family protein...		Potri.002G205900 [exp]	10.00	0.7663
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	10.67	0.7656
AT5G40740			unknown protein		Potri.001G337700 [exp]	14.07	0.6599
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	15.29	0.7062
AT5G17250			Alkaline-phosphatase-like fami...		Potri.003G059300 [exp]	15.58	0.7050

Compare expression of checked genes

Potri.013G035100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.