Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14880 422 / 2e-149 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT5G28020 422 / 5e-149 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT3G04940 421 / 9e-149 ATCYSD1 cysteine synthase D1 (.1) AT5G28030 411 / 7e-145 DES1 L-cysteine desulfhydrase 1 (.1.2) AT2G43750 414 / 8e-145 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G22460 405 / 6e-143 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT3G59760 408 / 6e-142 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT3G61440 342 / 9e-117 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G03630 332 / 2e-112 CS26 cysteine synthase 26 (.1) AT1G55880 110 / 3e-27 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048132 [exp] 465 / 6e-166 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.005G048066 [exp] 461 / 1e-164 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.005G048400 [exp] 439 / 1e-155 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 435 / 3e-154 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048200 [exp] 433 / 2e-153 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1) Potri.013G035500 [exp] 429 / 8e-152 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.008G153300 [exp] 427 / 4e-151 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G127800 [exp] 401 / 7e-140 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.014G086300 [exp] 352 / 1e-120 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019002 [exp] 436 / 2e-154 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10015947 [exp] 429 / 6e-152 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019003 [exp] 428 / 2e-151 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10027056 [exp] 401 / 9e-140 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10025589 [exp] 399 / 1e-138 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10014765 [exp] 350 / 6e-120 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10004118 [exp] 333 / 3e-114 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1) Lus10020342 [exp] 328 / 4e-111 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10009521 [exp] 301 / 7e-100 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10036370 [exp] 275 / 3e-91 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00291 [poplar] [flax] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.013G035200.2 pacid=42810804 polypeptide=Potri.013G035200.2.p locus=Potri.013G035200 ID=Potri.013G035200.2.v4.1 annot-version=v4.1 ATGGAGAACAGCTGTGAAATCAAGAAAGATGTTACTGAACTGATAGGCAATACCCCAATGGTATATCTCAACAAGGTTGTGGATGGTTGCGTGGCTCGTA TTGCTGCTAAGCTTGAAATGGTGGGACCTACCTCTAGTGTTAAAGACAGAATTGCATATAGTATGATCAAAGATGCAGAAGATAAGGGCTTGATTACACC AGGAAAGACCATACTCATTGAACCTACCAGTGGCAACACCGGCATTGGATTGGCGGCCATTGCTGCAATGAAGGGTTACAAACTTATACTGACCATGCCT GCTTCAATGAGTCTTGAGAGAAGAATTGTGTTACGGGCTCTTGGAGCTGAAGTTTGCCTTACTGATCCAGCCAAGGCCTTTGAGGGGGGACTTAAGAAAG CTGAGGAGATACTAAGAAACACACCTAATGGGTATATGCTTCAGCAATTTGAAAATCCTGCCAATCCAAAGATACATTATGAAACTACTGGCCCAGAAAT ATGGAAAGACTCGGGAGGGGAAATCGACATCCTGGTTGCAGGAATTGGGACTGGAGGAACCGTGACTGGAGCTGGGAGATTCCTCAAGGAGAAAAAGGCA GCTATTAAGGTGTATGGCATAGAGCCTGTTGAAAGTGCTGTATTGAGTGGAGGAAAACATGGCCCACATCTAATCCAAGGAATTGGTGCTGGGATCATTC CTAGTGTTTTGGATGTTGACATGCTAGATGAGGTTTTTCAGGTATCAAGTGAGGAAGCTATTGAAACTACCAAGCTGCTTGCCTTGAAAGAAGGTTTGCT GGTTGGGATATCATCTGGGGCAGCTGCTGCTGCTGCAATAAAGGTAGCTAAGAGGCCAGAAAATGCTGGGAAACTCGTTGTTGTTATATTCCCTAGTTTT GGAGAACGTTATTTGTCTTCCAAGCTTTTTGATTCCATTAGGCAAGAGGTAGAAAACATGACCTCTAATTGA
AA sequence Show only first row Show all	>Potri.013G035200.2 pacid=42810804 polypeptide=Potri.013G035200.2.p locus=Potri.013G035200 ID=Potri.013G035200.2.v4.1 annot-version=v4.1 MENSCEIKKDVTELIGNTPMVYLNKVVDGCVARIAAKLEMVGPTSSVKDRIAYSMIKDAEDKGLITPGKTILIEPTSGNTGIGLAAIAAMKGYKLILTMP ASMSLERRIVLRALGAEVCLTDPAKAFEGGLKKAEEILRNTPNGYMLQQFENPANPKIHYETTGPEIWKDSGGEIDILVAGIGTGGTVTGAGRFLKEKKA AIKVYGIEPVESAVLSGGKHGPHLIQGIGAGIIPSVLDVDMLDEVFQVSSEEAIETTKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLVVVIFPSF GERYLSSKLFDSIRQEVENMTSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035200 [exp]	0	1
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Potri.013G161700 [exp]	1.41	0.9088	Pt-DET1.1
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G192000 [exp]	3.46	0.8969
AT2G03710	MADS	AGL3, SEP4	SEPALLATA 4, AGAMOUS-like 3, K...		Potri.001G058200 [exp]	4.69	0.8443
AT1G03670			ankyrin repeat family protein ...		Potri.018G078450 [exp]	5.83	0.9001
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	6.63	0.8874
AT5G36930			Disease resistance protein (TI...		Potri.001G066500 [exp]	6.70	0.8747
AT1G03670			ankyrin repeat family protein ...		Potri.018G077250 [exp]	7.34	0.8803
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.008G067500 [exp]	9.16	0.8637
AT4G19160			unknown protein		Potri.001G193400 [exp]	9.21	0.8808
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.009G139400 [exp]	11.40	0.8392

Compare expression of checked genes

Potri.013G035200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.