Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14880 509 / 0 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT3G22460 485 / 3e-174 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT2G43750 452 / 6e-160 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G59760 451 / 1e-158 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT3G04940 435 / 3e-154 ATCYSD1 cysteine synthase D1 (.1) AT5G28020 423 / 1e-149 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT5G28030 400 / 1e-140 DES1 L-cysteine desulfhydrase 1 (.1.2) AT3G03630 366 / 5e-126 CS26 cysteine synthase 26 (.1) AT3G61440 365 / 6e-126 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT1G55880 112 / 4e-28 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048700 [exp] 577 / 0 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 566 / 0 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.008G153300 [exp] 531 / 0 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048066 [exp] 459 / 1e-163 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.005G048132 [exp] 458 / 4e-163 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.013G127800 [exp] 454 / 2e-160 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.013G035200 [exp] 448 / 2e-159 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048200 [exp] 426 / 1e-150 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1) Potri.014G086300 [exp] 380 / 6e-132 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015947 [exp] 558 / 0 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019003 [exp] 555 / 0 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019002 [exp] 455 / 3e-162 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10027056 [exp] 439 / 7e-155 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10025589 [exp] 439 / 1e-154 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10014765 [exp] 370 / 1e-127 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10020342 [exp] 359 / 4e-123 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10009521 [exp] 337 / 6e-114 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10004118 [exp] 327 / 8e-112 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1) Lus10036370 [exp] 293 / 4e-98 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00291 [poplar] [flax] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.013G035500.2 pacid=42811254 polypeptide=Potri.013G035500.2.p locus=Potri.013G035500 ID=Potri.013G035500.2.v4.1 annot-version=v4.1 ATGGCAGAGGAGAAGGGTTCAATTGCCAAAGATATCACTGAACTTATTGGTAAAACACCATTGGTGTATCTCAACAATGTTGTGGATGGTTGTGTGGCGC GAATTGCTGCCAAGCTGGAGATGATGGAACCTTGCTCGAGTGTCAAAGACAGGATTGGGTATAGTATGATCACAGATGCAGAGGAGAAGGGGCTTATCAA GGCGGGTGAGAGTGTCCTGATTGAGCCTACGAGTGGCAATACTGGCATAGGGCTGGCATTCATGGCAGCTGCTAAGGGCTACAGATTGATAATTACCATG CCTGCTTCGATGAGTCTAGAGAGAAGAATGGTTCTCCTTGCTTTTGGAGCTGAGTTGGTCCTTACTGATCCAGCCAGAGGTATGAAGGGGGCTGTTCAGA AGGCAGAAGAGATATCGGCAAAGACACCTAATTCTTATATTCTGCAACAATTTGAAAATCCTGCCAACCCAAAGGTTCACTATGAGACAACTGGACCAGA GATCTGGAAAGGCTCAGGTGGGAAAGTTGATGCCTTTGTTTCTGGGATAGGGACCGGGGGTACAATAACTGGAGCAGGGAAGTATCTCAAGGAGCAAAAC CCTGATATAAAGCTTTATGGTGTAGAACCGGTTGAAAGTGCAGTGCTGTCTGGAGGGAAACCTGGTCCACATAAGATCCAGGGAATTGGTGCTGGCTTTA TACCTGGAGTTTTGAATGTCGATTTACTTGATGAAACTGTTCAAATATCAAGTGAAGAAGCAATTGAAACTGCAAAGCTTCTCGCCTTGAAAGAAGGACT GCTGGTAGGGATATCATCTGGAGCTGCTGCAGCTGCTGCAATTAAGATAGCAAAGAGGCCTGAAAATGCTGGAAAACTCATTGTTGCGATCTTCCCTAGT TTTGGAGAGCGTTACCTATCCTCTGTGCTTTTTGAATCAGTGAAGAAGGAGGCCGAGAACATGGTTTTTGAGCCTTGA
AA sequence Show only first row Show all	>Potri.013G035500.2 pacid=42811254 polypeptide=Potri.013G035500.2.p locus=Potri.013G035500 ID=Potri.013G035500.2.v4.1 annot-version=v4.1 MAEEKGSIAKDITELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKAGESVLIEPTSGNTGIGLAFMAAAKGYRLIITM PASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEISAKTPNSYILQQFENPANPKVHYETTGPEIWKGSGGKVDAFVSGIGTGGTITGAGKYLKEQN PDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLNVDLLDETVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVAIFPS FGERYLSSVLFESVKKEAENMVFEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035500 [exp]	0	1
AT1G21780			BTB/POZ domain-containing prot...		Potri.002G082800 [exp]	4.47	0.7119
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.010G074100 [exp]	5.47	0.7207
AT3G09735			S1FA-like DNA-binding protein ...		Potri.016G087400 [exp]	18.43	0.6652	Pt-S1FA3.2
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Potri.003G138300 [exp]	23.36	0.6905	SEH1.1
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Potri.011G109500 [exp]	33.16	0.6490
AT4G09670			Oxidoreductase family protein ...		Potri.005G200200 [exp]	52.76	0.6833
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Potri.005G243100 [exp]	78.84	0.6375	Pt-SKP1.3
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Potri.007G072700 [exp]	85.49	0.6493
AT3G61200			Thioesterase superfamily prote...		Potri.014G078900 [exp]	112.62	0.6017
AT3G61113			Ubiquitin related modifier 1 (...		Potri.014G078200 [exp]	120.48	0.6372

Compare expression of checked genes

Potri.013G035500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.