Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XRN4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54490 1175 / 0 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) AT5G42540 718 / 0 AtXRN2, XRN2 exoribonuclease 2 (.1.2) AT1G75660 525 / 7e-171 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048900 [exp] 1553 / 0 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G070200 [exp] 763 / 0 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.005G237500 [exp] 565 / 0 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.002G024100 [exp] 514 / 2e-166 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004119 [exp] 1085 / 0 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10015946 [exp] 1023 / 0 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10000941 [exp] 1018 / 0 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10020397 [exp] 730 / 0 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10012434 [exp] 564 / 0 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013326 [exp] 547 / 4e-180 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10019004 [exp] 447 / 3e-147 AT1G54490 436 / 1e-143 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10024327 [exp] 449 / 3e-142 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013328 [exp] 429 / 1e-137 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 356 / 3e-107 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0280 [poplar] [flax] PIN PF03159 [poplar] [flax] XRN_N XRN 5'-3' exonuclease N-terminus
Representative CDS sequence Show only first row Show all	>Potri.013G035600.1 pacid=42810982 polypeptide=Potri.013G035600.1.p locus=Potri.013G035600 ID=Potri.013G035600.1.v4.1 annot-version=v4.1 ATGGGTGTACCGGCGTTCTACAGGCTTCTCGCAGACCGATACCCGCTATCAATTTCGGATGTGATCGAAGAGGAACCTCAAGAGGATTCGAATGGAAACT CCAAACCAATCGATGTTTCAAAGCCTAACCCTAACGGTATTGAGTTTGACAATCTGTATTTGGATATGAACGGGATTATCCATCCCTGCTTCCATCCTGA AGGCAAGCCTGCACCTGCTACTTATGATGATGTGTTCAAGTCCATATTTGCTTACATTGATCATTTGTTTGCTTTGGTTCGTCCAAGGAAACTACTTTTT ATGGCAATTGATGGGGTTGCTCCTAGAGCTAAAATGAACCAGCAACGGTCGCGACGGTTTAGAGCTGCAAAAGATGCTGCTCAAGCAGAAGCTGAAGAAG AAAGATTGAGGAAAGAATTTGAGGCTGAGGGGGAGCTTTTATCCGTTAAAGAAAAGCCTGAAACATTTGATTCTAATGTTATCACTCCTGGCACTCAATT TATGGCTGCTCTTTCGACTGCGCTTCAGTATTATATACAAAGTAGATTGAATCACAATCTGGGCTGGCAGAATACCAAGGTTATTCTTTCTGATTCAAAT GTTCCTGGTGAGGGAGAGCACAAAATCATGTCTTATATAAGATTGCAACGCAACCTTTCCGGTTTCAATCCAAACACACGCCATTGTCTGTATAGTCTGG ATGCAGATTTGATTATGCTGTCATTAGCCACGCGTGAGGTTCACTTTTCCATATTAAGAGAGATAGTTACACTTCCCGGGCAGCAGGATAAATGTTTTCT CTGCGGTCAAGCTGGTCATCTTGCAGCTGAATGTCGTGGCAAGCAAGGAGATGATGCTTTAGATTGGCATGTGGTAGATGATACCCCAATTCACAAGAAG AAATATCAGTTCCTCAACATCTGGGTGCTGCGAGAATATTTGCAATATGATCTGGACATTCTGAACCCACCATTTGCTATCGACTTTGAACGAATAGTGG ATGACTTTGTGTTCCTGTGTTTTTTTGTTGGCAATGACTTCCTTCCGCATATGCCAACATTGGAAATTAGGGAGGGTGCTATAAGCTTACTGATGCATAT TTATAGAAGGGAGTTCTCTGCAATGGGTGGTTATCTTACTCTTGCGGGTGAGGTTTTCCTAGATAAAGTAGAACACTTTATTCAGTGTGTTGGTGTTTAC GAGGAGCAAATCTTTCAGAAGAGGACTCGTATACAACAGGCTTTCGATAATAATGAAGAGATGAAACTCAAAGCAAGAAGAGAGTCCTCTGAAGTGATAC AAGCACCAGTTGTAGATAAGGTTAAATTAGGGGAACCTGGATACAAAGAGAGATACTATGCTGAGAAATTTGAGTTGTCAAATCAAGAGGAGATTGACAA AGTTAGAAAGGAAGTGGTATTGAAGTATGTGGAAGGATTGTGTTGGGTCTGTCATTATTACTTCCAAGGTGTTTGCTCTTGGCAATGGTTTTATCCGTTC CATTATGCTCCATTTGCTTCAGATCTTAAGGATCTGGGTGAGGTGGAATTAAACTTTTTTATTGGAGAGCCATTCAAACCCTTTGATCAACTTATGGGAA CGCTACCAGCTGCAAGTTCTAATGCTTTGCCAAAAGAATACAGGAAATTGATGACCAATCCATCTTCACCAATTCATAGATTCTTTCCCTCAGATTTTGA AATTGACATGAATGGCAAGCGCTTTGCTTGGCAGGGTATTGCCAAATTGCCATTCATTGATGAGAGGAAATTGCTTGCCCAGACAAAGAAGCTTGAAAGC ACTTTAACGGAGGAAGAGCAGATCAGGAATAGAGTGATGCTTGATTTGCTATATATTCATCCTGTTCATCCATTAGCTCAACTAGTTATTTCATACTATC AACAGAACGATCATTTATCTGAAGGTGAAAGATTTGCTTGGGAAATTGACACAAGAGCCAGTGGGGGGATGAATGGTTGTCTTTGGTTATATGAGAGAAA TGTGCGGAGAAGTGTGGTCCCCTCTCCTATACTTGGATTGCCAGCCTTAGAGGGTAACCAAGTTTTAAATATCACATTTCTAAATCCTAAAAACCGTGCA CACATCCCAGAAATTCCTGAGGGTGTAGTCATGCCTGAAAAGATCGTAAAACCTGTAGATCTTAAACCATTCCCCACATTATGGCATGAAGATAATGGCC GGAGACAGCAAGGCAGGGAAAGGCCACAAGTACAACGAGCAATAGCTGCCCCCTTCCTGGGGGATGCAGCTCATCGTCTTGTCAAGAACACCCTTAATAT CAAACCAAATGGTTCATCCTCTAGAGTGTTTGACCAGCAACTATATCATAGTATCCCCGGCAATTACACATTCTACAGACCAAGACCAGCTGGACCAGCT GGTTATGGAAGGGGCTATTGGGATGATCCAAACTATCATTATGCACAGCACAGTAACCAGCAAGGCCTGATGAGTAATCCTAGGTATCGATCTTTGTCAA ATGGTGTGCAAAGCAACCGACACAACTTTAGGACTCAAGACGGAGTACAGTACCATCAACAGTATCATAACTTGAGTACTGGGGTGTCTGCTCTGACTGT AGAAGAAAATATCAGAAGCAGGGCACCTGCAGTGATCTCACCTCGAATGCCGAATCCAGGAAACACTCCAAACTTACAAAATCAGGCCGAGCAGAACACA GGTCTACTTTCATCACCACCCACCAATTGGATCAACAAAACAGCTGCAGGAAACACTGGAATGTACTTCAAACAAAAATCAACATCGATAGGTCCAAATG AGAAGCAGGTGAAGCAGGTTTATCAGGTTAAGACACAAGTAGCTCAGGAGACGCCAGATATTCAAGCTCAGGAGACGCCAGATTTAAAACAGCAGTAA
AA sequence Show only first row Show all	>Potri.013G035600.1 pacid=42810982 polypeptide=Potri.013G035600.1.p locus=Potri.013G035600 ID=Potri.013G035600.1.v4.1 annot-version=v4.1 MGVPAFYRLLADRYPLSISDVIEEEPQEDSNGNSKPIDVSKPNPNGIEFDNLYLDMNGIIHPCFHPEGKPAPATYDDVFKSIFAYIDHLFALVRPRKLLF MAIDGVAPRAKMNQQRSRRFRAAKDAAQAEAEEERLRKEFEAEGELLSVKEKPETFDSNVITPGTQFMAALSTALQYYIQSRLNHNLGWQNTKVILSDSN VPGEGEHKIMSYIRLQRNLSGFNPNTRHCLYSLDADLIMLSLATREVHFSILREIVTLPGQQDKCFLCGQAGHLAAECRGKQGDDALDWHVVDDTPIHKK KYQFLNIWVLREYLQYDLDILNPPFAIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAISLLMHIYRREFSAMGGYLTLAGEVFLDKVEHFIQCVGVY EEQIFQKRTRIQQAFDNNEEMKLKARRESSEVIQAPVVDKVKLGEPGYKERYYAEKFELSNQEEIDKVRKEVVLKYVEGLCWVCHYYFQGVCSWQWFYPF HYAPFASDLKDLGEVELNFFIGEPFKPFDQLMGTLPAASSNALPKEYRKLMTNPSSPIHRFFPSDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLES TLTEEEQIRNRVMLDLLYIHPVHPLAQLVISYYQQNDHLSEGERFAWEIDTRASGGMNGCLWLYERNVRRSVVPSPILGLPALEGNQVLNITFLNPKNRA HIPEIPEGVVMPEKIVKPVDLKPFPTLWHEDNGRRQQGRERPQVQRAIAAPFLGDAAHRLVKNTLNIKPNGSSSRVFDQQLYHSIPGNYTFYRPRPAGPA GYGRGYWDDPNYHYAQHSNQQGLMSNPRYRSLSNGVQSNRHNFRTQDGVQYHQQYHNLSTGVSALTVEENIRSRAPAVISPRMPNPGNTPNLQNQAEQNT GLLSSPPTNWINKTAAGNTGMYFKQKSTSIGPNEKQVKQVYQVKTQVAQETPDIQAQETPDLKQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	0	1	XRN4.2
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	1.00	0.8383
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	3.16	0.8327
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.010G128600 [exp]	5.47	0.7718	PFT1.1
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.005G071600 [exp]	7.48	0.7669
AT5G04460			RING/U-box superfamily protein...		Potri.008G030100 [exp]	7.74	0.7831
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.010G026200 [exp]	8.36	0.7861	SPL7.1
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Potri.013G022200 [exp]	10.39	0.7718
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.003G062700 [exp]	11.53	0.7567
AT2G25760			Protein kinase family protein ...		Potri.003G049700 [exp]	13.26	0.7558
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Potri.005G087850 [exp]	13.56	0.7958

Compare expression of checked genes

Potri.013G035600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.