Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23750 1045 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G01820 778 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G66150 519 / 1e-169 TMK1 transmembrane kinase 1 (.1) AT1G24650 450 / 9e-144 Leucine-rich repeat protein kinase family protein (.1) AT5G15080 245 / 1e-71 Protein kinase superfamily protein (.1) AT1G76370 241 / 2e-71 Protein kinase superfamily protein (.1) AT1G20650 241 / 4e-71 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT4G02010 248 / 2e-70 Protein kinase superfamily protein (.1) AT3G28690 238 / 2e-70 Protein kinase superfamily protein (.1.2.3) AT3G01300 241 / 3e-70 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G049200 [exp] 1373 / 0 AT3G23750 589 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G141000 [exp] 1088 / 0 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 1083 / 0 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G103000 [exp] 798 / 0 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G134900 [exp] 519 / 1e-169 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 519 / 2e-169 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 511 / 9e-167 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.001G217700 [exp] 478 / 7e-154 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.016G070500 [exp] 478 / 8e-154 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039038 [exp] 796 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 788 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10023220 [exp] 512 / 8e-167 AT3G23750 903 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003807 [exp] 486 / 9e-157 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 481 / 4e-156 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 481 / 9e-155 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034432 [exp] 471 / 2e-151 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 469 / 1e-150 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 468 / 3e-150 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 461 / 3e-147 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G035900.1 pacid=42811881 polypeptide=Potri.013G035900.1.p locus=Potri.013G035900 ID=Potri.013G035900.1.v4.1 annot-version=v4.1 ATGTGTTTTCATTCAATAGCCTTTCTTTCCTCTAGCTTTCTCACCTGTTTTCTCCCAATGGGTCACCACCACCCTTTCCTCTTCTCCCTCTTCCTCCTCC TCTTCTCCACCGCCACAGCCGACGACGGCGCCACCATTCTTAAGCTGGCCAAATCTATAACCCCATTACCCTCCGGCTGGTCCACAAAATCCTCCACCAC TTTTTGTTCCTGGCATGGTATAAACTGTGATTCTTCCAAATCAAGAGTCACCTCCATTTCTCTCTCAAAACTCAGCCTCTCAGGCACTCTTCCTCCAGAA ATATCTACCCTTTCTGAACTACAATCTCTGTCTGTACAGGGCAACCAGCTTTCTGGGGATCTCCCATCCCTCGCCAACTTAACGAATTTGCAATACATTT TCTTGGATTCCAACAATTTCACGTCCATCCCTCCTGGTTTTTTTCAAGGATTAACGGGTTTGCAAACGTTTAGTATTGGAAATAATGTTAATTTGTCTCC GTGGCAGCTTCCAACTGATTTAGCTCAATGTACTAGTCTGACAACGTTAACAGCCAATGATTGTCAACTTTTTGGTTCTATCCCTGATGTTTTTGGGTCG TTACCAAGTTTGCAGAATTTGAGACTGAGTTATAATAATTTGACGGGGGTTTTGCCACCTTCTTTTGCGAATTCTGGGATACAGAATTTGTGGGTGAATA ATCAGCAAATTGGGTTAACTGGGAGTATTGAGGTGATTGGATCGATAACTCAGTTGTCTCAGGTTTGGCTTCATATGAATCAGTTTACGGGTCCTATACC AGATTTGACAGAATGTAAGAGCCTTTTTGATTTGCAGTTGAGGGATAATCAGTTTACAGGGATTGTGCCTGCGTCGTTGGTTTCTTTGCCGAATTTAGTG AATGTTTCTTTGTCTAATAACAAATTCCAAGGACCTGTGCCTCAGTTTCCCCCGTCTGTTATCACCGTTAAAAATGAAGGGATTAACAAATACTGTGCAG GTCCTGGGGTTCCTTGTGATGCTCTGGTGATGACATTGCTTGAGATTGCTGGGGGTTTTGGGTATCCGTCGACATTGTCTGATAAGTGGGATGGTAATGA TGCTTGTGGTTGGCCCCTTGTTACTTGTGACGTTGGGAAGAAGAATGTTGTTACTGTGAATTTGGCAAAGCAGCAATTTACGGGGAGTATCTCTCCATCA TTTGCCAAGCTCTCTTCTTTGAAAAGTTTGTATCTTAATGAGAATAACTTGACGGGTTCAATTCCTGATAGCTTGACCAAGCTGCCAGAGCTAGAAACCC TTGACGTTTCCAACAATAACCTATCAGGAAAAATTCCCGAGTTTCCACGCTCTGTGAAATTAATTACAAAGCCGGGGAACCCTTTCTTGAGGACAGATGT AGATACTTCCAGTGGAGGAACTACCAATGGCACTTCCAATGGAGGAACTACCAGTGGCACTTCCAGTGGAGGAAGCAGTGCAGGTAGTACCAAGATACCT GGAGGTGTGATTGCAGGCATCATTGTTGCTGTTGTCATCTTTATTGTTGTCCTGTCATTTGTCTTATATCAATATAAGAAACGACATCCCAAATCTGGGA AGGAGTTGAAATGGGATGGTGGAAAGGAATTTTTCAAAAATGAAGTTGCAGGTGGAGGGAATGGTTCTAATAAGGTCCCTAATGCATTGCATAGCCAGAG CAGTGATGGTGATAACAGTAAAAATATTTTTGAGGGTGGGAATGTTGCTGTGCCAATTGAATTTCTTCGACAAGTGACTGATAATTTTCATGAGATTAAT ATTATAGGAAGAGGTGGTTTTGGAGTGGTTTATAGAGGAGAGTTGCATGATGGAACCAAGATTGCTGTGAAGAGAATGGAATCCACAGTGATGGGAAACA AAGGTATTAGTGAGTTTCAAGCAGAGATTGCGGTGCTTACAAAGGTTAGGCATAGACATCTAGTTGCTCTCTTAGGTTATTGTATAAATGGCAACGAGAG ACTCTTGGTCTATGAGTATATGCCACAAGGAACACTAGGACAGCATCTATTTGAATGTCACGATTACAGGTACACTCCACTTACATGGAAGCAGCGGATC ACAATTGCACTGGATGTGGCAAGAGGAGTTGAGTATCTGCACGGTTTAGCACAGCAGAGTTTCATTCACAGAGATTTGAAAACTTCAAACATTCTTCTTG GGGACGACATGAGAGCCAAAGTGGCAGATTTTGGTTTGGTTAAAAATGCACCAGATGGGAAGTATTCTGTGGAAACACGATTGGCAGGCACATTTGGTTA TCTTGCACCTGAGTATGCTGCTACTGGAAGAGTGACTTCAAAGGTGGATGTCTATGCCTTTGGAGTTGTTCTAATGGAGATTATAACTGGCAGGAAAGCA GTGGATGACACTAGGCCAGAAGAGGCAGCTCATCTGGTCACATGGTTCCGTAGGATCCTGATCAACAAGGAGAACATTCCAAAGGCAATTGATGAGTCTC TAAATCCAGATGAAGAGACATTAGCCACCATTTATACGGTGACTGAGTTAGCAGGACATTGCACTGCTCGTGATCCATATCAGAGACCGGACATGGGGCA TGCAGTGAATGTATTGGCACCTCTTGTAAAGCAATGGAGGCCGGCTAGCCAACAAGAGGACCAGAACTGTGGCACAGACCTAGACACCAACCTTCCTGAA ACACTGCGAAGATGGCAAACTGAAGAAGTAACTTCTACGATGTCTGATGATACTTCCTTCACTCAGACCCGGTCAAGTGTTCCCTCGATGGCCTCTGGCT TTTCAGACACATTTACTTCAAATGATTGTCGGTGA
AA sequence Show only first row Show all	>Potri.013G035900.1 pacid=42811881 polypeptide=Potri.013G035900.1.p locus=Potri.013G035900 ID=Potri.013G035900.1.v4.1 annot-version=v4.1 MCFHSIAFLSSSFLTCFLPMGHHHPFLFSLFLLLFSTATADDGATILKLAKSITPLPSGWSTKSSTTFCSWHGINCDSSKSRVTSISLSKLSLSGTLPPE ISTLSELQSLSVQGNQLSGDLPSLANLTNLQYIFLDSNNFTSIPPGFFQGLTGLQTFSIGNNVNLSPWQLPTDLAQCTSLTTLTANDCQLFGSIPDVFGS LPSLQNLRLSYNNLTGVLPPSFANSGIQNLWVNNQQIGLTGSIEVIGSITQLSQVWLHMNQFTGPIPDLTECKSLFDLQLRDNQFTGIVPASLVSLPNLV NVSLSNNKFQGPVPQFPPSVITVKNEGINKYCAGPGVPCDALVMTLLEIAGGFGYPSTLSDKWDGNDACGWPLVTCDVGKKNVVTVNLAKQQFTGSISPS FAKLSSLKSLYLNENNLTGSIPDSLTKLPELETLDVSNNNLSGKIPEFPRSVKLITKPGNPFLRTDVDTSSGGTTNGTSNGGTTSGTSSGGSSAGSTKIP GGVIAGIIVAVVIFIVVLSFVLYQYKKRHPKSGKELKWDGGKEFFKNEVAGGGNGSNKVPNALHSQSSDGDNSKNIFEGGNVAVPIEFLRQVTDNFHEIN IIGRGGFGVVYRGELHDGTKIAVKRMESTVMGNKGISEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTLGQHLFECHDYRYTPLTWKQRI TIALDVARGVEYLHGLAQQSFIHRDLKTSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTSKVDVYAFGVVLMEIITGRKA VDDTRPEEAAHLVTWFRRILINKENIPKAIDESLNPDEETLATIYTVTELAGHCTARDPYQRPDMGHAVNVLAPLVKQWRPASQQEDQNCGTDLDTNLPE TLRRWQTEEVTSTMSDDTSFTQTRSSVPSMASGFSDTFTSNDCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23750			Leucine-rich repeat protein ki...		Potri.013G035900 [exp]	0	1
					Potri.004G047932 [exp]	6.63	0.7072
AT1G10020			Protein of unknown function (D...		Potri.005G150100 [exp]	7.54	0.7174
					Potri.015G013950 [exp]	8.36	0.7270
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.006G077600 [exp]	9.05	0.6474	MBD902
AT4G02040			unknown protein		Potri.010G027500 [exp]	13.96	0.6882
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.010G177300 [exp]	17.66	0.6691
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Potri.015G083400 [exp]	18.16	0.6712
					Potri.015G072666 [exp]	20.85	0.7051
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.015G020200 [exp]	22.84	0.7037
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Potri.010G201700 [exp]	30.59	0.6776

Compare expression of checked genes

Potri.013G035900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.