Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54520 72 / 4e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G049500 [exp] 83 / 6e-20 AT1G54520 343 / 1e-115 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015939 [exp] 74 / 1e-16 AT1G54520 437 / 5e-153 unknown protein Lus10001794 [exp] 73 / 2e-16 AT1G54520 433 / 1e-151 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07466 [poplar] [flax] DUF1517 Protein of unknown function (DUF1517)
Representative CDS sequence Show only first row Show all	>Potri.013G036201.1 pacid=42811838 polypeptide=Potri.013G036201.1.p locus=Potri.013G036201 ID=Potri.013G036201.1.v4.1 annot-version=v4.1 ATGAACAGCATAAAAAGGCAAAGCACAAAAAGCAAGAGATCTAATGGATTTGGCAATGAGTATATAGTGGCAGTTGAGGTGTTGTGGACACCTCAGAATG AAAATGACATGCTGTCAGAGAGGGAACTGCCTGAAGATTACCCACTTTTGAGGCCTCTAAGAGTTCATATCAGAGACTTGTGTTTTGCGTTGGAGATGTG GAATTTACTTTGCAAATTAGGTGTAAATTTATATAGAACAAGCCCACGGTATACAGAGTGTTTGCCTGGTATTGAGCAGATGTTCCTGAACTGA
AA sequence Show only first row Show all	>Potri.013G036201.1 pacid=42811838 polypeptide=Potri.013G036201.1.p locus=Potri.013G036201 ID=Potri.013G036201.1.v4.1 annot-version=v4.1 MNSIKRQSTKSKRSNGFGNEYIVAVEVLWTPQNENDMLSERELPEDYPLLRPLRVHIRDLCFALEMWNLLCKLGVNLYRTSPRYTECLPGIEQMFLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54520			unknown protein		Potri.013G036201 [exp]	0	1
AT1G06225		CLE3	CLAVATA3/ESR-RELATED 3 (.1)		Potri.004G053700 [exp]	12.68	0.6774
AT1G01540			Protein kinase superfamily pro...		Potri.004G073801 [exp]	21.26	0.6575
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Potri.001G067300 [exp]	24.73	0.6559
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014388 [exp]	69.98	0.5709
AT4G21020			Late embryogenesis abundant pr...		Potri.011G054200 [exp]	76.74	0.5949	Pt-PM32.2
AT1G23070			Protein of unknown function (D...		Potri.018G062600 [exp]	90.80	0.5862
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.005G232650 [exp]	288.91	0.5249
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G025000 [exp]	291.97	0.5249
AT5G62550			unknown protein		Potri.016G129250 [exp]	292.98	0.5249

Compare expression of checked genes

Potri.013G036201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.