Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04910 802 / 0 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT5G28080 662 / 0 WNK9 Protein kinase superfamily protein (.1.2) AT3G22420 610 / 0 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G51630 464 / 3e-156 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT1G49160 463 / 6e-156 WNK7 Protein kinase superfamily protein (.1.2) AT5G58350 461 / 2e-154 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G18750 455 / 1e-152 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT3G48260 431 / 8e-144 WNK3 with no lysine (K) kinase 3 (.1) AT5G41990 427 / 7e-142 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 408 / 9e-135 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G049800 [exp] 1232 / 0 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 849 / 0 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 828 / 0 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.012G086700 [exp] 511 / 7e-174 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 498 / 5e-169 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.016G134600 [exp] 479 / 3e-161 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.013G155100 [exp] 478 / 6e-161 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.019G128600 [exp] 476 / 4e-160 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.005G057300 [exp] 461 / 2e-153 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001789 [exp] 897 / 0 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10020236 [exp] 894 / 0 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 681 / 0 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10010547 [exp] 627 / 0 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10017957 [exp] 502 / 5e-165 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10042223 [exp] 459 / 2e-154 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1) Lus10008590 [exp] 457 / 1e-153 AT5G58350 624 / 0.0 with no lysine (K) kinase 4 (.1) Lus10030229 [exp] 458 / 2e-151 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10024192 [exp] 447 / 2e-150 AT5G58350 540 / 0.0 with no lysine (K) kinase 4 (.1) Lus10009921 [exp] 444 / 3e-149 AT5G58350 545 / 0.0 with no lysine (K) kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G036300.1 pacid=42810714 polypeptide=Potri.013G036300.1.p locus=Potri.013G036300 ID=Potri.013G036300.1.v4.1 annot-version=v4.1 ATGAATGGTCTTTCACATCTGGAACCACCTGATTACTCTGAGTTTGTTGAGGTTGATCCAACTGGAAGATATGGCAGATACAATGAAATCCTTGGCCGAG GAGCTTCAAAGATAGTTTATAGAGCATTTGATGAGTACGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTATATGATTTCTTACAAAGTCCTGAAGA TCTTGAAAGACTCTACTGTGAGATTCATCTCCTTAAGACATTGAAGCATAAGAACATAATGAAGTTCTACACTTCTTGGGTTGATACTGCAAATAGGAAC ATCAACTTTGTGACGGAAATGTTCACTTCTGGGACTTTGAGACAGTATAGACTAAAGCACAAGAGAGTAAACATTCGAGCTGTGAAGCATTGGTGTAGGC AGATCTTGAGAGGGCTTCTTTATCTCCATAGCCATGACCCTCCTGTGATCCACAGAGATCTAAAGTGTGATAATATTTTTGTGAATGGGAACCAAGGAGA GGTGAAGATTGGAGATCTTGGCCTTGCGGCAATTCTTCGAAAATCTCATGCTGCTCATTGTGTTGGGACACCTGAGTTTATGGCTCCAGAAGTGTATGAA GAGGCATACAACGAATTGGTTGATATTTATTCGTTTGGTATGTGCATCTTGGAGATGGTCACTTTTGAATATCCCTATAGTGAATGCACTCATCCTGTTC AAATCTACAAGAAAGTTATCTCTGGGAAAAAACCAGATGCTTTGTACAAAGTAAAGGATCCAGAAGTACGACACTTTGTTGAGAAATGTTTGGCCACTGT GTCACTTAGGCTATCTGCAAGGGAGTTGTTGAATGACCCTTTTCTCCAAATTGATGGTTGTGAATCCGATTTGAGACTGTTGGACCATAGGATTGAAGTT GATGGCTTAGGACCCCTAATTAGGCCACCTTATCTTGAGCATCATGACAATAATAATTCCTACAGTAGTGGATACTTAAATGGTTATGACTATGAGGCTC AGAATGAATGGGAATATCATCAAGTCGAGGTCGAACTGAGTGGAATTGAACTTTTCGAGTATCATGATGAACATCCTGCAAACGTTGACATAAGTATAAA AGGAAAGAGGGGTGATGATGGTGGCATCTTCTTAAGACTCCGAATTGCAGATAAAGAAGGTCGTATACGAAACATATATTTCCCTTTTGACATTGAAAAT GATACAGCATTGAGCGTGGCAACTGAAATGGTTGCCGAGCTTGATATCACCGATCAAGATGTGACTAAAATAGCAGATATGATTGATGGGGAGATTGCTT CCTTGGTACCTGAATGGAGGCCAGGGCCAGGCATAGAGGAGACACCCTGCTTTGCAAATCAAACTCTGTGTCACAATTGTGCTTCCACCTGCACCTCTAA TGGTTCATTCATGGATTTTTTGTCAAATAATCCATGTTGTAGCCATGGATGTGCTTCAATGCATGGAAGGTTTGGAGAGATCATTTTTGAAGTGGATGAA TCTGAGCATCATTTAACAGAAGGGGCGCCAAACATACTCAACCAACCGGACTACTTGCACTATAAGGAAATTTGGGGTCAACAAGAAAGCCGGCAACTTA CTCCAATAGGCTCGGGAAAAAGTCAGTCGGATGAAGAGTATGCAAATTTTGATCAGTCAATCCCAGAAAAGGATACAAAAGATACCAAGATGGAAAATGG AATTCCTGGAGGAAAGTCATTTCAGCACTTCACAGGTTCCGGTTCTCTTAGCAGACTGACTTCATTGTACAATGACCTTGCGGACAGTAATGAGAATGAA ATCCAGCAAGACTTGAGATGGCTTAAAGCGAAACACCAAATGGAATTGAGGAAACTTAGAGATGAACGATTAGGACTTGCAGTGAAACCTTCAACTTCTA GGAACGGGGAAGAGAAAACAAGTAATGTGGTTTCTTCAACTTCAATGTTGAATTCATTTCAAGAAGGCAGCAATGGAGATCTCTTGAAATCCCTTGCTAA GCAGATTAGTCATAGTTTGCATACTCATGCCGGCGCCCTTTCGGATACTCAAAGGCCCTGGAATCACAAGGTAATGAATCAACCCCCAAGAGCGAAAGAT ATGGTCAATGCCAAGAATCTCTGCACCGGGCCAATGCTCCCACACTCGCTCCATAGGACAACATCCTTACCAGTTGATGCTGTTGATGTATAA
AA sequence Show only first row Show all	>Potri.013G036300.1 pacid=42810714 polypeptide=Potri.013G036300.1.p locus=Potri.013G036300 ID=Potri.013G036300.1.v4.1 annot-version=v4.1 MNGLSHLEPPDYSEFVEVDPTGRYGRYNEILGRGASKIVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRN INFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYE EAYNELVDIYSFGMCILEMVTFEYPYSECTHPVQIYKKVISGKKPDALYKVKDPEVRHFVEKCLATVSLRLSARELLNDPFLQIDGCESDLRLLDHRIEV DGLGPLIRPPYLEHHDNNNSYSSGYLNGYDYEAQNEWEYHQVEVELSGIELFEYHDEHPANVDISIKGKRGDDGGIFLRLRIADKEGRIRNIYFPFDIEN DTALSVATEMVAELDITDQDVTKIADMIDGEIASLVPEWRPGPGIEETPCFANQTLCHNCASTCTSNGSFMDFLSNNPCCSHGCASMHGRFGEIIFEVDE SEHHLTEGAPNILNQPDYLHYKEIWGQQESRQLTPIGSGKSQSDEEYANFDQSIPEKDTKDTKMENGIPGGKSFQHFTGSGSLSRLTSLYNDLADSNENE IQQDLRWLKAKHQMELRKLRDERLGLAVKPSTSRNGEEKTSNVVSSTSMLNSFQEGSNGDLLKSLAKQISHSLHTHAGALSDTQRPWNHKVMNQPPRAKD MVNAKNLCTGPMLPHSLHRTTSLPVDAVDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.013G036300 [exp]	0	1
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Potri.005G107400 [exp]	2.44	0.7866
AT3G29390		RIK	RS2-interacting KH protein (.1...		Potri.017G093600 [exp]	6.48	0.7512
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	6.48	0.7565	CYP71.3
					Potri.003G196200 [exp]	7.74	0.7145
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.011G142000 [exp]	10.58	0.7071
AT1G71980			Protease-associated (PA) RING/...		Potri.013G111500 [exp]	13.41	0.7150
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Potri.006G049300 [exp]	14.49	0.7102
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Potri.002G048500 [exp]	21.90	0.6600
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Potri.010G202700 [exp]	23.81	0.6533
AT5G11700			unknown protein		Potri.018G058300 [exp]	28.77	0.6818

Compare expression of checked genes

Potri.013G036300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.