Plant FIBer expression Database

Potri.013G036500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04890 242 / 3e-81 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
AT2G46100 84 / 3e-19 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
AT1G16320 40 / 0.0005 Uncharacterized conserved protein (DUF2358) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G037050
[exp]
206 / 2e-68 AT3G04890 78 / 1e-18 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Potri.002G162800
[exp]
87 / 1e-20 AT2G46100 286 / 5e-98 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Potri.014G092200
[exp]
46 / 7e-06 AT2G46220 273 / 5e-93 Uncharacterized conserved protein (DUF2358) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015938
[exp]
251 / 1e-84 AT3G04890 223 / 8e-74 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Lus10009193
[exp]
236 / 2e-78 AT3G04890 199 / 5e-64 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Lus10007918
[exp]
88 / 6e-21 AT2G46100 289 / 2e-99 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Lus10036387
[exp]
88 / 9e-21 AT2G46100 283 / 8e-97 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Lus10012651
[exp]
42 / 0.0001 AT2G46220 256 / 4e-86 Uncharacterized conserved protein (DUF2358) (.1)
Lus10010135
[exp]
42 / 0.0003 AT2G46220 254 / 2e-85 Uncharacterized conserved protein (DUF2358) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0051 NTF2 PF10184 DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence
>Potri.013G036500.4 pacid=42812017 polypeptide=Potri.013G036500.4.p locus=Potri.013G036500 ID=Potri.013G036500.4.v4.1 annot-version=v4.1
ATGTCTGTTACAAAAATGGCGGGAATATGCTCTCTGAATCCAACAACCTTAATGACTTTTAAGACAATTCATGGAATTAGATGCTGCTCAGGAGCAACAG
ATAATGAAAAGAAGAGCCAAACTAGAACTAAAACCCCACAGATTTTGAAATTGGCTGTAAGTGGGGTCACAGAGCTTTTAAGGGTTTTCTCCTTCTCGGG
CAAAGAGAGATTAGAGAAAGTGAACAATAAAGATAGAGATGAGATATCTGTTTCTGGTATTGATGATGTTATAATGATCCTCAAGTCTGATTATGAGAAT
GCTTATTTCGTCACAGGGGTTTTCACGTCAGCGATTTATGATGAAGATTGTGTCTTTGAAGATCCAACCATTAAATTCCAGGGTACTAAGTTGTATTCAC
GCAATTTGAAATTGCTGGTTCCTTTCTTCGATTGTCCATCAATTGGATTACAAGACATTGAGAAGGGTGTCAATTCCGAAACATATTTTGTGCTGGCAAG
ATGGAAACTAAGAACATACCTGAAATTCCCATGGAGGCCTCTCATTTCAATCGACGGAAGCACAGTCTATGAATTAGATAACAAGCTTAAAATTGTTAGG
CATGCTGAGAGCTGGAATGTTTCTGCACTTGAAGCTATTGGTCAGATATTTACCCCTAGCTTTGATAGACCTGGTGAATGA
AA sequence
>Potri.013G036500.4 pacid=42812017 polypeptide=Potri.013G036500.4.p locus=Potri.013G036500 ID=Potri.013G036500.4.v4.1 annot-version=v4.1
MSVTKMAGICSLNPTTLMTFKTIHGIRCCSGATDNEKKSQTRTKTPQILKLAVSGVTELLRVFSFSGKERLEKVNNKDRDEISVSGIDDVIMILKSDYEN
AYFVTGVFTSAIYDEDCVFEDPTIKFQGTKLYSRNLKLLVPFFDCPSIGLQDIEKGVNSETYFVLARWKLRTYLKFPWRPLISIDGSTVYELDNKLKIVR
HAESWNVSALEAIGQIFTPSFDRPGE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G04890 Uncharacterized conserved prot... Potri.013G036500
[exp]
0 1
AT1G68660 Ribosomal protein L12/ ATP-dep... Potri.010G128500
[exp]
4.89 0.9456
AT4G29400 Protein of unknown function (D... Potri.014G148300
[exp]
5.29 0.9558
AT1G20340 PETE2, DRT112 PLASTOCYANIN 2, DNA-DAMAGE-REP... Potri.005G246100
[exp]
6.48 0.9507 Pt-PETE.1
AT5G48470 unknown protein Potri.002G251400
[exp]
8.94 0.9538
AT3G03630 CS26 cysteine synthase 26 (.1) Potri.019G045800
[exp]
9.16 0.9538
AT2G32650 RmlC-like cupins superfamily p... Potri.014G156900
[exp]
11.66 0.9410
Potri.013G101050
[exp]
11.83 0.9362
AT2G26550 HO2 heme oxygenase 2 (.1.2.3) Potri.014G034200
[exp]
14.07 0.9377
AT3G06730 TRXz, TRXP ,TRX... thioredoxin putative plastidic... Potri.001G028500
[exp]
14.69 0.9440
AT1G07830 ribosomal protein L29 family p... Potri.002G185800
[exp]
14.79 0.8667

Potri.013G036500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.