Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 578 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 546 / 1e-178 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 421 / 3e-131 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 402 / 6e-124 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 395 / 4e-120 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 389 / 4e-118 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 381 / 3e-116 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G62230 370 / 1e-113 ERL1 ERECTA-like 1 (.1.2) AT3G49670 366 / 2e-111 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 362 / 4e-109 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G037533 [exp] 1372 / 0 AT4G08850 620 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G029700 [exp] 1288 / 0 AT4G08850 587 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G037500 [exp] 1163 / 0 AT4G08850 551 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129400 [exp] 919 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129300 [exp] 917 / 0 AT4G08850 687 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 828 / 0 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129100 [exp] 827 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.015G123100 [exp] 826 / 0 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G120733 [exp] 817 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002293 [exp] 604 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008712 [exp] 603 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 598 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 595 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 588 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 563 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 536 / 1e-176 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 535 / 6e-175 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 523 / 1e-170 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 429 / 2e-135 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G036600.1 pacid=42811005 polypeptide=Potri.013G036600.1.p locus=Potri.013G036600 ID=Potri.013G036600.1.v4.1 annot-version=v4.1 ATGATGTCCTTCCTACAGAAACCATTCTCAAAGTTTCTCCAAGTCCTTTTTTTTCTCCTTCTAGTGTGCATTCCTTCTTTCTTTGCCTTTCATCCTAATT CCTCTGCAACTTCATTTGGTGCTGCCACATATGTAGCTGCTGAAGGTAATAAAGAAGCGGAGGCTCTCCTAAAATGGAAAGCAAGTCTTGATGACAACCA CAGCCAATCTGTCCTGTCTTCTTGGGTTGGCAGCAGCCCTTGCAAGTGGCTTGGGATCACTTGTGACAATTCTGGAAGTGTCGCGGGTTTCAGCCTTCCA AATTTTGGTCTGAGAGGTACACTTCATAGTTTCAACTTCTCATTCTTCCCCAATCTTCTCACTCTCAATCTCGGGAACAATTCACTCTACGGAACTATTC CACTTGAGATGGGATTGTTAACAAGTCTTAACTTTCTCTACCTTGATAAAAATAATCTCACTCGTAGGATCCCTTTTTCTATTGGAAATTTGAGAAACTT ATCCATTCTCAATCTCAAGAATAACAAACTCTCTGGTTCCATCCCTTCTTCTATTGGGAACATGACTTTGCTCACTCGACTTGATCTGAACAATAATAAT TTATCTGGATCTGTTCCTCGGGAAATAGGACAACTTGAATCCCTTGTTGAATTGAAATTGTCTTCAAATAATTTCACTGGCCATTTACCACGAGACTTGT GCCTTGGTGGGTTGCTTGTAAATTTTACAGCCGCCAACAATCATTTTTCTGGTCCAATCCCTAAAAGCTTGCGAAATTGCACTAGTCTATTTAGATTCAG GCTTGACGGGAACCAATTGTCAGGGAATATTTCTGAAGATTTTGGCCTCTACCCAAACTTGAACTATGTGGACCTAAGTCACAATGATTTGTCCGGTGAG CTTAAGTGGAAATGGGGAGGTTTTCACAACTTGGCGTGCCTATTATTGTCAAACAATAATATCTCCGGTGAGATACCATCAGAGCTTGGAAAGGCTACTA GGCTACAAATAATTGATCTCTCGTCAAATCTCCTAAAGGGGACAATTCCAAAAGAATTGGTGCAGTTGAAGGCGTTGTACAAGCTTACTCTTCATAACAA CCATCTTTGTGGTGTCATTCCCTTTGAAATCCAAATGCTATCTCGACTTCAATCCCTTAATTTAGCTTCTAATAATCTTGGTGGATCAATCCCAAAACAA CTGGGACAGTGCTCAAATTTATTACAGTTGAACTTGAGTCATAATAAGTTTACAGGGAGCATCCCATCTGAGATAGGCTTACTGCATTTACTTGGACATC TAGATCTCAGTGGGAATCTTCTGGCAGGAGAGATACCATCACAAATTGGGCAATTGAAACGGTTAGAAACGATGAACCTCTCTCACAACAAACTTTCCGG TTTGATTCCAACTGCTTTTGTAGATTTGGTGAGCTTGACAGCTGTAGACATCTCCTACAATGAACTAGAGGGCCCTATCCCCGAAATCAAAGGCTTCACT GAAGCATTTATGAATAATAGTGGTCTCTGTGGAAATGTCAGTGGTCTAAAGCCTTGTACACTTCCTACAAGCAGGAGAAAGAGCAACAAAATTGTCATTT TAATTCTTTTTCCTCTCCTGGGCAGTCTACTTCTACTACTTATCATGGTTGGGTGTTTATACTTTCACCACCGAACAAGTAGAGACAGAATTTCCTGTTT AGGAGAGCGACAAAGTCCACTCAGTTTTGCAGTATGGGGCTATCAGGAAGAGATCCTCCATGACACTATCATCCAGGCCACTAATAATTTCAACTCCAAT AACTGTATAGGGAAAGGGGGATACGGAATTGTTTATCGAGCCATGTTGCCAACAGGTCAGGTGGTTGCCGTGAAGAAACTTCACTCATCAAGAGAGGGCG AGCTTATGAATATGAGAACTTTTAGAAATGAGATTCACATGTTAATAGATATTCGACATCGAAATATTGCGAAGTTATATGGATTTTGTTCATTAATAGA GCACTCTTTTTTAGTTTACGAGTTCATAGAAAGGGGAAGTTTGAAGATGAATTTATCTATCGAAGAACAGGCAATGGACTTGGATTGGAATAGAAGGCTT AATGTTGTTAAAGGAGTGGCCAATGCATTATCCTATTTGCACCATGATTGCTCGCCTCCAATCATTCATCGAGACATTTCCAGCAGCAATGTTCTTTTAG ATTTGGAATTCGAGGCTCATGTTTCGGATTTTGGGACAGCTCGGCTCTTGATTCCTGACTCGACCAACTGGACCTCATTTGCTGGCACCTTCGGATACAT AGCTCCAGAGCTAGCTTACACAATGAGAGTGAACGAGAAGTGCGATGTCTACAGCTTTGGAGTGGTCACAATGGAAGTAATAATGGGAATGCATCCGGGT GATCTCATCTCATCTCTTTCTGCATCAGCATTTTCCTCCTCGTCGTGCTCACAAATCAACCAGCATGCATTGTTGAAGGATGTGATAGACCAGCGTATCC CACTTCCTGAAAATCGAGTTGCAGAAGGTGTGGTCTACATTATCAAAATAGCATTTGAATGCTTGCTTGCCAATCCCCAATCTAGGCCAACCATGCGACA AGTAGCTTCGAAGCTCATAGCTCGATGGCCTCCGCTGTCAAAGTCATTCTCCGCAATAACATTGGAAGATCTGATGCCTCAAACAACTATGACAGGCTGA
AA sequence Show only first row Show all	>Potri.013G036600.1 pacid=42811005 polypeptide=Potri.013G036600.1.p locus=Potri.013G036600 ID=Potri.013G036600.1.v4.1 annot-version=v4.1 MMSFLQKPFSKFLQVLFFLLLVCIPSFFAFHPNSSATSFGAATYVAAEGNKEAEALLKWKASLDDNHSQSVLSSWVGSSPCKWLGITCDNSGSVAGFSLP NFGLRGTLHSFNFSFFPNLLTLNLGNNSLYGTIPLEMGLLTSLNFLYLDKNNLTRRIPFSIGNLRNLSILNLKNNKLSGSIPSSIGNMTLLTRLDLNNNN LSGSVPREIGQLESLVELKLSSNNFTGHLPRDLCLGGLLVNFTAANNHFSGPIPKSLRNCTSLFRFRLDGNQLSGNISEDFGLYPNLNYVDLSHNDLSGE LKWKWGGFHNLACLLLSNNNISGEIPSELGKATRLQIIDLSSNLLKGTIPKELVQLKALYKLTLHNNHLCGVIPFEIQMLSRLQSLNLASNNLGGSIPKQ LGQCSNLLQLNLSHNKFTGSIPSEIGLLHLLGHLDLSGNLLAGEIPSQIGQLKRLETMNLSHNKLSGLIPTAFVDLVSLTAVDISYNELEGPIPEIKGFT EAFMNNSGLCGNVSGLKPCTLPTSRRKSNKIVILILFPLLGSLLLLLIMVGCLYFHHRTSRDRISCLGERQSPLSFAVWGYQEEILHDTIIQATNNFNSN NCIGKGGYGIVYRAMLPTGQVVAVKKLHSSREGELMNMRTFRNEIHMLIDIRHRNIAKLYGFCSLIEHSFLVYEFIERGSLKMNLSIEEQAMDLDWNRRL NVVKGVANALSYLHHDCSPPIIHRDISSSNVLLDLEFEAHVSDFGTARLLIPDSTNWTSFAGTFGYIAPELAYTMRVNEKCDVYSFGVVTMEVIMGMHPG DLISSLSASAFSSSSCSQINQHALLKDVIDQRIPLPENRVAEGVVYIIKIAFECLLANPQSRPTMRQVASKLIARWPPLSKSFSAITLEDLMPQTTMTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G036600 [exp]	0	1
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Potri.010G160800 [exp]	2.00	0.8894
AT1G75210			HAD-superfamily hydrolase, sub...		Potri.014G196700 [exp]	3.00	0.8974
AT3G53560			Tetratricopeptide repeat (TPR)...		Potri.006G213600 [exp]	3.60	0.9079
AT2G42120		POLD2	DNA polymerase delta small sub...		Potri.016G045800 [exp]	4.35	0.8674
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.002G042700 [exp]	8.94	0.8876
AT1G56345			Pseudouridine synthase family ...		Potri.013G009300 [exp]	9.48	0.8772
AT4G31980			unknown protein		Potri.003G209500 [exp]	9.94	0.8872
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.005G234000 [exp]	10.95	0.8709	Pt-VFCYSPRO.2
AT1G15170			MATE efflux family protein (.1...		Potri.010G117000 [exp]	11.09	0.8514
AT5G23230		NIC2	nicotinamidase 2 (.1)		Potri.003G003300 [exp]	11.22	0.8885

Compare expression of checked genes

Potri.013G036600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.