Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 551 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 520 / 3e-169 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 396 / 2e-122 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 386 / 7e-119 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 387 / 7e-118 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 373 / 9e-113 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 356 / 1e-107 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 354 / 1e-107 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 350 / 1e-106 Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G73080 352 / 3e-106 ATPEPR1, PEPR1 PEP1 receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G036600 [exp] 1159 / 0 AT4G08850 578 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G037533 [exp] 1144 / 0 AT4G08850 620 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G029700 [exp] 1000 / 0 AT4G08850 587 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129400 [exp] 880 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129300 [exp] 869 / 0 AT4G08850 687 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 799 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 790 / 0 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060168 [exp] 787 / 0 AT4G08850 735 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060042 [exp] 786 / 0 AT4G08850 733 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031161 [exp] 568 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 567 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008712 [exp] 565 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 559 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 555 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 551 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 501 / 9e-163 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 501 / 2e-161 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019035 [exp] 492 / 2e-159 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 395 / 3e-123 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G037500.2 pacid=42812369 polypeptide=Potri.013G037500.2.p locus=Potri.013G037500 ID=Potri.013G037500.2.v4.1 annot-version=v4.1 ATGATGTCCTTGCTACAGAAACCATTCTCAATGTTTCTCCAAGTCCTTTTTTTTCTCCTTCTAATTTGCATTCCTTCTTTCTTTGCCTTTCCTCCTAAAT CCTCTGCAACTTCATTTGGTGCTGCCAAATATGTTGCTGCTGAAGGTAATAAAGAAGCGGAGGCTCTCCTAAAATGGAAAGCAAGTCTTGACGACAAGCA CAGCCAATCTGTCCTGTCTTCTTGGGTTGGTAGCAGCCCTTGCAAGTGGCTTGGAATCACTTGTGACAATTCTGGAAGTGTCGCGGATTTCAGCCTTCCA AATTTCGGTCTGAGAGGTACACTTCATGGTTTCAACTTCTCATCCTTCCCCAATCTTCTCACTCTCAATCTCTGGAAAAATTCACTCTATGGAACTATTC CATCCCACATTAGTAACCTGACCAAAATCACCAATTTAGACTTGAGTGATAATCATTTCACAGGAAATATTCCACTTGAGATAGGATTGTTGACAAGTCT TAACTTTTTGTACCTTGATAAAAATAATCTCACTGGTTTGATCCCAGCTTCTATTGGAACTTTGAAACGCCTATCCATTCTCTATCTATGGTGGAACAAA CTCTCTGGTTCTATTCCTTCTTCTATTGGGAACATGACTATGCTCACTCGACTTGATCTGAGCACAAATAATTTGTCTGCATCTGTTCCTCGGGAAATAG GACAACTCGAATCCCTTGTTGGTTTGAGCTTGTCCTTTAATAATCTTAATGGTTCTCTGCCCCCGGAGGTGAATAATCTCACACATTTGACGGTTTTGCA ATTGTTTTCAAACAATTTCACTGGCCATTTACCACGAGACTTGTGCCTTGGTGGGTTACTAGTAAATTTTTCAGCCGGCTACAATCATTTTTCTGGTCCA ATCCCTAGAAGCTTGCGAAATTGTACAGGTCTTTTTAGATTTAGGCTTGACTGGAACCAATTGACAGGGAATATTTCTGAAGATTTTGGCCTCTACCCAA ACTTGAACTATGTGGACCTCAGTCACAATGATTTGTATGGTGAGCTTACGTGGAAATGGGGAGGTTTTCACAACTTGGCGAGCCTAAAATTGTCAAACAA TAATATCACCGGTGAGATACCATCAGAGCTTGGAAAGGGTACTGGGCTACAAATGATTGATCTCTCGTCAAATCTCCTAAAGGGGACAATTCCAAAAGAA TTGGGGCAGTTGAAGGCGTTGTTCAACCTTGCTCTTCATAACAACCATCTTTTTGGTGTCCTTCCCGTTGAAATCCAAATGCTATCTCAACTTCAATCCC TTAATTTAGCTTCTAATAATCTTGGTGGATCAATCCCAAAACAAGTGGGAGAGTGCTCAAATTTATTGCAATTGAACTTGAGTCATAATAAGTTCATAGG GAGCATCCCATCTGAGATAGGCTTCCTGCATTTTCTTGGAAATCTAGATCTCAGTGGGAATCTTCTGGCAGGAGAGATACCATCACAAATTGGGCAATTG AAACAGTTAGAAACGATGAACCTGTCTCACAACAAACTTTCAGGTTTGATTCCAAATGATTTTGTAGATTTGGTGAGCTTGACAGCTGTAGACATTTCCT ACAATGAACTAGAGGGCCCTATCCCCAAAATCAAAGGCTTCATTGAAGCTCCATTTGAAGCTTTTATGAATAATAGTGGTCTCTGTGGAAATGCCAGTGG TCTAAAGCCTTGTACACTTCTTACAAGCAGGAGAAAGAGCAACAAAATTGTCATTTTGATTCTTTTTCCTCTCCTGGGCAGTCTACTTCTACTACTTATC ATGGTTGGGTGTTTATACTTTCACCACCGAACAAGTAGAGAAAGAATTTCCTGTTTAGGAGAGCGACAAAGTCCACACAGTTTTGTAGTATGGGGCCATG AGGAAGAGATCCTACATGAAACTATCATCCAGGCCACTAATAATTTCAACTTCAATAACTGCATTGGGAGAGGGGGATATGGAATTGTTTATCGAGCCAT GTTGCCAACTGGTCAGGTGGTTGCCGTGAAGAAACTTCACCCATCAAGAGAGGGCGAGCTTATGAATTTGAGAACTTTTAGAAATGAGATTCGCATGTTA ATAGATATTCGACATCGGAATATTGTGAAGTTATATGGATTTTGTTCAATAATAGAGCACTCTTTTTTAGTTTACGAGTTCATAGAAAGGGGAAGTTTGA AGATGAATTTATCTAGCGAAGAACAGGCAATGGACTTGGATTGGAATAGAAGGCTTAATGTTGTTAAAGGAGTGGCCAACGGATTATCCTATTTGCACCA TGATTGCTCGCCTCCAATCATTCATCGAGACATTTCCAGCAGCAATGTTCTTTTAGATTTGGAATACGAGGCTCATGTTTCGGATTTTGGGACAGCTCGG CTCTTGATGCCTGACTCAACCAACTGGACCTCATTTGCTGGCACCTTCGGATACACAGCTCCAGGTACATACTTGATTTCATTCTTAATATATATAAGCA GAACAATACTACCAGTACTATGA
AA sequence Show only first row Show all	>Potri.013G037500.2 pacid=42812369 polypeptide=Potri.013G037500.2.p locus=Potri.013G037500 ID=Potri.013G037500.2.v4.1 annot-version=v4.1 MMSLLQKPFSMFLQVLFFLLLICIPSFFAFPPKSSATSFGAAKYVAAEGNKEAEALLKWKASLDDKHSQSVLSSWVGSSPCKWLGITCDNSGSVADFSLP NFGLRGTLHGFNFSSFPNLLTLNLWKNSLYGTIPSHISNLTKITNLDLSDNHFTGNIPLEIGLLTSLNFLYLDKNNLTGLIPASIGTLKRLSILYLWWNK LSGSIPSSIGNMTMLTRLDLSTNNLSASVPREIGQLESLVGLSLSFNNLNGSLPPEVNNLTHLTVLQLFSNNFTGHLPRDLCLGGLLVNFSAGYNHFSGP IPRSLRNCTGLFRFRLDWNQLTGNISEDFGLYPNLNYVDLSHNDLYGELTWKWGGFHNLASLKLSNNNITGEIPSELGKGTGLQMIDLSSNLLKGTIPKE LGQLKALFNLALHNNHLFGVLPVEIQMLSQLQSLNLASNNLGGSIPKQVGECSNLLQLNLSHNKFIGSIPSEIGFLHFLGNLDLSGNLLAGEIPSQIGQL KQLETMNLSHNKLSGLIPNDFVDLVSLTAVDISYNELEGPIPKIKGFIEAPFEAFMNNSGLCGNASGLKPCTLLTSRRKSNKIVILILFPLLGSLLLLLI MVGCLYFHHRTSRERISCLGERQSPHSFVVWGHEEEILHETIIQATNNFNFNNCIGRGGYGIVYRAMLPTGQVVAVKKLHPSREGELMNLRTFRNEIRML IDIRHRNIVKLYGFCSIIEHSFLVYEFIERGSLKMNLSSEEQAMDLDWNRRLNVVKGVANGLSYLHHDCSPPIIHRDISSSNVLLDLEYEAHVSDFGTAR LLMPDSTNWTSFAGTFGYTAPGTYLISFLIYISRTILPVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G037500 [exp]	0	1
					Potri.019G108700 [exp]	2.00	0.9258
AT4G03170	B3		AP2/B3-like transcriptional fa...		Potri.001G397100 [exp]	2.82	0.8976
					Potri.019G109501 [exp]	5.47	0.9223
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G029700 [exp]	6.63	0.8776
					Potri.019G105600 [exp]	6.63	0.9204
					Potri.019G108500 [exp]	8.06	0.8769
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G037632 [exp]	10.58	0.8531
AT2G37900			Major facilitator superfamily ...		Potri.017G145500 [exp]	13.41	0.8777
AT5G45540			Protein of unknown function (D...		Potri.015G114101 [exp]	16.24	0.8551
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119900 [exp]	16.97	0.8774

Compare expression of checked genes

Potri.013G037500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.