Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 620 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 583 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G63930 450 / 4e-142 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 428 / 8e-134 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 422 / 4e-130 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 403 / 2e-124 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G62230 390 / 2e-121 ERL1 ERECTA-like 1 (.1.2) AT4G20140 392 / 3e-119 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G24240 390 / 3e-119 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 385 / 9e-119 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G036600 [exp] 1372 / 0 AT4G08850 578 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G029700 [exp] 1356 / 0 AT4G08850 587 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G037500 [exp] 1185 / 0 AT4G08850 551 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129300 [exp] 958 / 0 AT4G08850 687 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129400 [exp] 954 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129100 [exp] 919 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.015G122900 [exp] 913 / 0 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 910 / 0 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 898 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002293 [exp] 656 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008712 [exp] 650 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 649 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 642 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 617 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 613 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 598 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019036 [exp] 553 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 543 / 2e-178 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 468 / 1e-150 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G037533.1 pacid=42811252 polypeptide=Potri.013G037533.1.p locus=Potri.013G037533 ID=Potri.013G037533.1.v4.1 annot-version=v4.1 ATGATGTCCTTACTACAGAAACCAGTCTCAATGTTTCTCCAAGTCCTTTTTTTCCTCCTTCTAATGTGCTTTCCTTCTTTCTTTGCCTTTCCTCCTAATT CCTCTGCAACTTCATTTGGTGCTGCCACATATGCAGTTGCTGAAGGTAATGAAGAAGCGGAGGCTCTCCTAAAATGGAAAGCAAGTCTTGATGACAACCA CAGCCAATCTGTCCTGTCTTCTTGGGTTGGCAGCAGCCCTTGCAAGTGGCTTGGAATCACTTGTGACAATTCTGGAAGTGTCGCGCATTTCAGCCTTCAA CATTTTGATCTGAGAGGTACGCTTCATAGTTTCAACTTCTCATCCTTCCCCAATCTTCTCACCCTCAATCTCAGGAACAATTCACTCTACGGAACTATTC CGCTTGAGATAGGATTGTTAACAAGTCTTAACGTTCTCTACCTTGATAAAAATAATCTCACCGATTTGATCCCTTCTTCTATTGGAAATTTGAGAAACTT ATCCATTCTCAATATCGCAGAGAATAATTTATCTGGATCTGTTCCTCGAGAAATAGGACAACTTGAATCCCTTGTTTTTTTGGGCTTGTCCTTTAATAAT CTCAGTGGTTCTCTACCCCCCGAGATGAATAACCTCACACATTTGATGACTTTGCGCTTGTCTTTAAACAATTTCACTGGCCATTTACCACGAGACTTGT GCCTTGGTGGGTTGCTTGTAAATTTTACAGCTGTCCGCAATCATTTTTCTGGCCCAATCCCTAAAAGCTTGCGAAATTGTACTAGTCTATTTAGAGTTAG GCTTGAGGGGAACCAATTGACGGGGAATATTTCTGAAGATTTTGGCCTCTACCCCAACTTGAACTACATGGACCTAAGTCACAATAATTTGTATGGTGCG CTTACGTGGAAATGGGGAGGTTTTCACAACTTGGCGAGCCTAAAATTGTCAAACAATAACATCTCCGGTGAGATACCATCAGAGTTTGGAAAGGCTCCCG AGCTACAAATGATTGATCTCTCGTCAAATCTCCTGAAGGGGACAATTCCAAAAGAATTGGGGCAGTTGAAGGCGTTGTACAACCTTACTCTTCATAACAA CCATCTTTCTGGTGTCGTTCCCTTTGAAATCCAAATGCTATCTCAACTTCGTGCCCTTAATTTAGCTTCTAATAATCTTGGTGGATCAATCACAAAACAA TTGGGAGAGTGCTCGAATTTATTACAGTTGAACTTGAGTCATAATAAGTTCATAGGGAGCATCCCATCTGAGATAGGCTTCCTGCATTTTCTTGAAGATC TAGATCTCAGTGGGAATGTACTGGCAGGAGAGATACCATCAGAAATTGGGCAATTGAAACAGTTAGAAACGATGAACTTCTCTCACAACAAACTTTCCGG TTTGATTCCAACTGCTTTTGTAGATTTGGTGAGCTTGACAGCTGTTGACATCTCCTACAATGAATTAGAGGGCCCTATTCCCAAAATCAAAGGCTTTAAT GAAGCTCCATTGGAAGCTTTTATGAATAATAGTGGTCTATGTGGAAATGCCAGTGGTCTAAAGCCTTGTACACTTCTTAAAAGCAGGAGAAGGAGCAGCA AAATTGTCATTTTGATTCTTTTTCCTCTCCTGGGCAGTCTACTTCTACTACTTACCATGGTTGAATGTTTATACTTTCTCCGCCGAACAAGTAGAGAAAG AATCTCCTTTTTAAGAGAGCAACAAAGTCCACTCAGTTTAGCAGTATGGGGCTATGAGGAAGAGATGCTACATGAAACTATCATCCAGGCCACTAATAAT TTCAACTCCAATAACTGTATAGGGAAAGGGGGATACGGAATTGTTTATCAAGCCATGTTGCCAACAGGTCAGGTGGTTGCCGTGAAGAAACTTCACCCAT CAAGAGAGGGCGAGCTTATGGATTTGAAAACTTTTAGAAATGAGATTCGCATGTTAATAGATATTCGACATCGGAATATTGTGAAGTTATATGGATTTTG TTCATTAGTAGAGCACTCTTTTTTAGTTTACGAGTTCATAGAAAGGGGAAGTTTGAAGATGAATTTATCTAGCGAAGAACAGGCGATGGACTTGGATTGG AATAGAAGGCTTAATGTTGTTAAAGGAGTGGCCAATGCATTATCCTATTTGCACCATGATTGCTCGCCTCCAATCATTCATCGAGACATTTCCAGCAGCA ATGTTCTTTTAGATTTGGAATACGAGGCTCATGTTTCGGATTTTGGGACAGCTCGGCTCTTGATGCCTGACTCAACCAACTGGACTTCATTTGCTGGCAC CTTCGGATACACAGCTCCAGAGCTAGCTTACACAATGAGAGTGAACGAGAAGTGCGATGTCTACAGCTTTGGAGTGGTCACAATGGAAGTAATAATGGGA ATGCATCCGGGTGATCTCATCTCATCTCTTTCTGCATCAGCATTTTCGTCCTCGTCGTGCTCACAAATCAACCAGCATGCATTGTTGAAGGATGTGATAG ACCAGCGTATCCCACTTCCTGAAAATCGAGTTGCAGAAGGTGTGGTCTCCATTATCAAAATAGCATTTGCATGCTTGCTTGCCAATCCCCAATCTAGGCC AACCATGCGACAAGTAGCTTCGGAGCTCATATCTCGATGGCCTCCGCTGTCAAAGTCATTCTCCGCAATAACATTGGAAGATCTGATGCCTCAAACAACT GTGACAGGCTGA
AA sequence Show only first row Show all	>Potri.013G037533.1 pacid=42811252 polypeptide=Potri.013G037533.1.p locus=Potri.013G037533 ID=Potri.013G037533.1.v4.1 annot-version=v4.1 MMSLLQKPVSMFLQVLFFLLLMCFPSFFAFPPNSSATSFGAATYAVAEGNEEAEALLKWKASLDDNHSQSVLSSWVGSSPCKWLGITCDNSGSVAHFSLQ HFDLRGTLHSFNFSSFPNLLTLNLRNNSLYGTIPLEIGLLTSLNVLYLDKNNLTDLIPSSIGNLRNLSILNIAENNLSGSVPREIGQLESLVFLGLSFNN LSGSLPPEMNNLTHLMTLRLSLNNFTGHLPRDLCLGGLLVNFTAVRNHFSGPIPKSLRNCTSLFRVRLEGNQLTGNISEDFGLYPNLNYMDLSHNNLYGA LTWKWGGFHNLASLKLSNNNISGEIPSEFGKAPELQMIDLSSNLLKGTIPKELGQLKALYNLTLHNNHLSGVVPFEIQMLSQLRALNLASNNLGGSITKQ LGECSNLLQLNLSHNKFIGSIPSEIGFLHFLEDLDLSGNVLAGEIPSEIGQLKQLETMNFSHNKLSGLIPTAFVDLVSLTAVDISYNELEGPIPKIKGFN EAPLEAFMNNSGLCGNASGLKPCTLLKSRRRSSKIVILILFPLLGSLLLLLTMVECLYFLRRTSRERISFLREQQSPLSLAVWGYEEEMLHETIIQATNN FNSNNCIGKGGYGIVYQAMLPTGQVVAVKKLHPSREGELMDLKTFRNEIRMLIDIRHRNIVKLYGFCSLVEHSFLVYEFIERGSLKMNLSSEEQAMDLDW NRRLNVVKGVANALSYLHHDCSPPIIHRDISSSNVLLDLEYEAHVSDFGTARLLMPDSTNWTSFAGTFGYTAPELAYTMRVNEKCDVYSFGVVTMEVIMG MHPGDLISSLSASAFSSSSCSQINQHALLKDVIDQRIPLPENRVAEGVVSIIKIAFACLLANPQSRPTMRQVASELISRWPPLSKSFSAITLEDLMPQTT VTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G037533 [exp]	0	1
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Potri.017G031600 [exp]	1.73	0.8069	NAC125
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119851 [exp]	2.44	0.7984
AT1G59970			Matrixin family protein (.1)		Potri.019G073700 [exp]	5.65	0.7634
					Potri.004G061350 [exp]	11.48	0.6775
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Potri.002G030500 [exp]	21.79	0.7271	Pt-CKX6.3
AT2G46940			unknown protein		Potri.002G185700 [exp]	32.03	0.7618
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.019G018000 [exp]	33.40	0.6795
AT5G22090			Protein of unknown function (D...		Potri.009G016600 [exp]	34.42	0.7779
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.001G088100 [exp]	42.73	0.7298
					Potri.016G064901 [exp]	54.77	0.7607

Compare expression of checked genes

Potri.013G037533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.