Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 627 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 505 / 5e-158 transmembrane receptors;ATP binding (.1.2) AT5G17680 491 / 2e-153 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 460 / 6e-140 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 442 / 4e-137 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G44510 436 / 1e-133 TAO1 target of AVRB operation1 (.1) AT5G49140 419 / 2e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 414 / 1e-128 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 422 / 3e-128 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44480 418 / 5e-127 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G135700 [exp] 1499 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 946 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 894 / 0 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 880 / 0 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 874 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 858 / 0 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 843 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 818 / 0 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 813 / 0 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 654 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10039850 [exp] 589 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 585 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 568 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 528 / 4e-168 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 499 / 3e-158 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 486 / 7e-152 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10019708 [exp] 493 / 8e-152 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 486 / 1e-151 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10001375 [exp] 443 / 2e-134 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13191 [poplar] [flax] AAA_16 AAA ATPase domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.013G037599.1 pacid=42812073 polypeptide=Potri.013G037599.1.p locus=Potri.013G037599 ID=Potri.013G037599.1.v4.1 annot-version=v4.1 ATGTTCATGTCTTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTAGACTTGGATGGCATTATGATGTGTTTCTAAGTTTTAGAGGTGAAGATACTCGCA AGAATTTTACGGATCATCTTTACACAGCTTTACAAAATGCAGGAATCCATACATTTCGAGATGATAACGAACTTCCTAAAGGAGAAGAAATCTCCTCACA CCTCCTCAAAGCAATTAAAGAGTCCAAGATTTCGATAGTGGTTTTCTCTAAGGGCTATGCTTCCTCCACTTGGTGTCTTGATGAACTTTCAGAGATTCTT GATTGCAGACAAACAGCTGGTCAGATTGTTCTACCAGTTTTCTATGATATTGATCCTTCTGATATTAGAAAACAGACGGGGAGTTTTGCTGAAGCCTTTG ATAGACATGAAGAACGTTTTAAGGAAGAAATGGAGAAGGTCCAAAAGTGGAGAAAAGCTCTTGTGGAGGCTGGAAGATTATCTGGGTTGGATCTTCACAG TATCGCAAATGGGCATGAATCAAAATTAATTCAAATGATTGTCGAAGAAGTTTTAAGTAAATTGAATCCCAGATACATGAAAGTTGCCACATATCCAGTA GGTATTGATTCTCAAGTCAAAGATATCATTTCCATGTTATGTGTTGGTACAAATGAAGTTCGAATTGTGGGAATCTATGGGATGCCAGGAATAGGCAAGA CAACCATAGCAAAAGCTGTTTTTAACCAAATTTGTCATCAATTTGAAGGAAGTAGTTGCCTTTTGAACATCAGAGAAAGGTTAGATCAACACAGAGGTCT ACTTCAACTACAACAACAGCTTCTTCGTGATGCTTTCAAGGGATATATTCGGATTCATGATGATGATGATGAAGATGGCATCAAAAGCCAATTTTGTCGT AAAAGGGTACTTGTTATTCTCGACGATGTTGATCAATTGAAACATTTGCGTGGATTGGCAGGAGAGCGAGACTGGTTTGGTCCTGGAAGTAGAATCGTAA TTACAACTAGAGATGAACGTTTACTCACACGACTTGAAGTGGAAAAACAATATCACGCCGAAGGGCTGAACAATGATGAGTCTCTTCAACTTTTCAGTTG GCATGCCTTTAAGAAGCCCCATCCAATGAAAGAATACGTTGAGCTGTCAAAAGTTGTTGTTGATTATGTTGGTGGAGTTCCATTGGCTCTTGAAGTCCTA GGCTCTAAGTTGTTTAAAAGAAGCATCACTCACTGGAGAAGTTTTATAGAGAAATTGCAAAAACATCTTCCACATCAAATTCAGAGGCAACTTATAACTA GTTTGGATGATTTGGATGGTGAAGTGAAGGGTATGTTCCTTGATATTGCGTGTTTCTTTAATGGTATGGATAAAGATTACGTGGGAAAAATACTCGATGG TCGTGGTTTTTATCCAGAAATGGGTTTTGATATTCTCAGGGAAAGATCCCTTTTAACAGTCAACAGTGAGAATGAGTTACAGATGAATAATCTCTTACGA GACATGGGAAGGGAGATCATTCATCAAATGGCTCCAAACCATCCCGGAAAGCGTAGCAGACTTTGGCATCGCGAAGATATAATGGACGTACTCGATAAAT ATTGTTCGGGCACAGAGGCAGTGGAGGGTATCGTGCTAGACGCTCAAGCATCAAAAGATGTAGTTCCAAGCACATCATTTGCACCAATGACGTCTTTGCA GTTGCTCAAATTCAGTGGAGGACAAGTCCGCGGACACTACGAACATATTTCCAAGGCATTGATATGGCTTTGCTGGCATAAATTCTCTTTAAAAACCTTA CCACACAAATTTCGATTAGACAGCCTAGTTGTTCTTGACATGCAGCACAGCAACATCAGAGAACTCTGGAAGGAGACCGAGTGTCTAAACAATCTGAAAG TCATGGATCTCAGCAACTGTAGGTTCTTTGCTAAAACACCGAACTTCTCTGGACTCCCTAGTTTGGAGAGACTAATTCTAGAAAATTGCGGAAGTTTAGC GGATATTCACCAATCTGTTGGAGAATTGAAAAAACTTGTTTTCTTGAATTTAAAGGGATGTTACGGGCTACAGAATCTTCCAGAAAGCATTTGTGAGTTG AAATCTCTTGAAACGATGAACCTGCAGAGCTGCCCTAGTCTCAAGAAATTGCCAGAGAAATTGGGTAATATGCAAGTCTTAACTGATCTTCTATTAGATG AAACCGGAGTTCAAAATCTACCCTCTTCCACTGGAATTTTGAAGAAGCTCAAAAAGTTATTGGTACGTGGAAGTGGACTTGGTTTTGGTCTGGAAGTTCA ACGTTACCGTCCGCAAGCTTCCTCCTTCTATAGTCGTCAAAGTCGGCGCCTGGAAGCTCAACTTCAGCGTCAGGAAGCTTTCCCTTCTCTGGATTCAAAT GCCTTTCACTCGAAAGAGCTTGCTCTCAAGCAACAACCTTTCCTGCCACCCTCCTTCTCTGGTTTAAGCTCATTGACAACACTCGATATTAGTAATCGCT ATTTATCTAACAATGATATTTCCATCAATCTTGGGAGTTTATCTTCTCTCCAGGATCTGAATTTGGCAGGAAATCATTTCTCCGAGTTGCCTGCCGGCAC TGGCCACCTTGCAAAGCTAGAGAAATTGGACCTGTCACGCTGTCTAAATCTTCTGTTTATCTCAGAGATCCCCTCGAGTTTAAGAGCTTTGGTGGCACGT GATTGCACATCATTGGAAAAGGTGTCAATTCAGTCAAAAACAGCGCCGGATCTGTTACTGGGTGGCTGTGGAAAACTAGCTGAGATTCAAGGCTTGGAGA GTGTAGAAAACAAACCAGTCATTCGCATGGAAAACTGTAACAATTTGTCAAACAATTCTAAGGAGATTCTTCTTCAGGTTTTGTCCAAGGGAAAGCTTCC TGACGTTGTTCTCCCTGGTAGCGATGTACCGCATTGGTTTATGCAATATCAAAGAGATAGATCTTCCACAAAATTTCGTATACCACCCCTTTCAGCTGGT TTAAGTCCAGGACTAATTGTTTGGACTGTCTATGCAGCCATTGAAGTCGCCAGATGTACACGACCGTACTTGAACATTCAAATTCCAACTTGCATTTCTC TTTGTTCTGCTTCTATTAGAAAAAAGAAAGATGATAATGAATTGTTTTATACACGACCATGCTTGGACATTTCTTCAAGCCATGGATGTTATGATGGAGA TCATTCATGGGTGATCTATATCCCATTTAGCAGGATTCAAGGTGCAATAGAAGGTGGAGACGAATTGGAAGTGTCTGTCAAGCCAGGCGATGATACTATT GTAAAGAAGTGTGTACTACTGTAA
AA sequence Show only first row Show all	>Potri.013G037599.1 pacid=42812073 polypeptide=Potri.013G037599.1.p locus=Potri.013G037599 ID=Potri.013G037599.1.v4.1 annot-version=v4.1 MFMSSSSSSSSSSSSRLGWHYDVFLSFRGEDTRKNFTDHLYTALQNAGIHTFRDDNELPKGEEISSHLLKAIKESKISIVVFSKGYASSTWCLDELSEIL DCRQTAGQIVLPVFYDIDPSDIRKQTGSFAEAFDRHEERFKEEMEKVQKWRKALVEAGRLSGLDLHSIANGHESKLIQMIVEEVLSKLNPRYMKVATYPV GIDSQVKDIISMLCVGTNEVRIVGIYGMPGIGKTTIAKAVFNQICHQFEGSSCLLNIRERLDQHRGLLQLQQQLLRDAFKGYIRIHDDDDEDGIKSQFCR KRVLVILDDVDQLKHLRGLAGERDWFGPGSRIVITTRDERLLTRLEVEKQYHAEGLNNDESLQLFSWHAFKKPHPMKEYVELSKVVVDYVGGVPLALEVL GSKLFKRSITHWRSFIEKLQKHLPHQIQRQLITSLDDLDGEVKGMFLDIACFFNGMDKDYVGKILDGRGFYPEMGFDILRERSLLTVNSENELQMNNLLR DMGREIIHQMAPNHPGKRSRLWHREDIMDVLDKYCSGTEAVEGIVLDAQASKDVVPSTSFAPMTSLQLLKFSGGQVRGHYEHISKALIWLCWHKFSLKTL PHKFRLDSLVVLDMQHSNIRELWKETECLNNLKVMDLSNCRFFAKTPNFSGLPSLERLILENCGSLADIHQSVGELKKLVFLNLKGCYGLQNLPESICEL KSLETMNLQSCPSLKKLPEKLGNMQVLTDLLLDETGVQNLPSSTGILKKLKKLLVRGSGLGFGLEVQRYRPQASSFYSRQSRRLEAQLQRQEAFPSLDSN AFHSKELALKQQPFLPPSFSGLSSLTTLDISNRYLSNNDISINLGSLSSLQDLNLAGNHFSELPAGTGHLAKLEKLDLSRCLNLLFISEIPSSLRALVAR DCTSLEKVSIQSKTAPDLLLGGCGKLAEIQGLESVENKPVIRMENCNNLSNNSKEILLQVLSKGKLPDVVLPGSDVPHWFMQYQRDRSSTKFRIPPLSAG LSPGLIVWTVYAAIEVARCTRPYLNIQIPTCISLCSASIRKKKDDNELFYTRPCLDISSSHGCYDGDHSWVIYIPFSRIQGAIEGGDELEVSVKPGDDTI VKKCVLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.013G037599 [exp]	0	1
AT4G33860			Glycosyl hydrolase family 10 p...		Potri.009G087700 [exp]	5.19	0.7352
AT4G23740			Leucine-rich repeat protein ki...		Potri.012G033200 [exp]	9.79	0.6925
AT2G42005			Transmembrane amino acid trans...		Potri.004G206800 [exp]	10.48	0.7367
AT4G14305			Peroxisomal membrane 22 kDa (M...		Potri.004G009201 [exp]	16.24	0.7336
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079200 [exp]	18.49	0.7190
AT1G77680			Ribonuclease II/R family prote...		Potri.005G174800 [exp]	24.79	0.7291
					Potri.011G008676 [exp]	27.36	0.7148
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Potri.001G233100 [exp]	43.24	0.6181
AT3G29060			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G086800 [exp]	43.86	0.6441
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G013200 [exp]	44.82	0.6570

Compare expression of checked genes

Potri.013G037599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.